miRNA display CGI


Results 1 - 20 of 1298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6520 3' -64.9 NC_001847.1 + 78559 0.66 0.524539
Target:  5'- cCGGCGCugccguucGCGUcacccucuacaucacGCggCCGCgcucccuggagcuGCCGCCGCg -3'
miRNA:   3'- -GCCGCG--------UGCA---------------CGgaGGCG-------------CGGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 14667 0.66 0.521757
Target:  5'- gCGGgGCGCGUGUCggCGUGCagGCaggaGCg -3'
miRNA:   3'- -GCCgCGUGCACGGagGCGCGg-CGg---CG- -5'
6520 3' -64.9 NC_001847.1 + 109867 0.66 0.521757
Target:  5'- uGGUGCGCGguguucaacGCCUaccugaCCGCGCUGUaccgGCa -3'
miRNA:   3'- gCCGCGUGCa--------CGGA------GGCGCGGCGg---CG- -5'
6520 3' -64.9 NC_001847.1 + 46095 0.66 0.521757
Target:  5'- cCGGCGCGCcaUGCCgUCGC-CCaGCgCGCa -3'
miRNA:   3'- -GCCGCGUGc-ACGGaGGCGcGG-CG-GCG- -5'
6520 3' -64.9 NC_001847.1 + 49560 0.66 0.521757
Target:  5'- cCGGCGCGCccGUCgaCgGCGCCGuuGa -3'
miRNA:   3'- -GCCGCGUGcaCGGa-GgCGCGGCggCg -5'
6520 3' -64.9 NC_001847.1 + 20704 0.66 0.521757
Target:  5'- aGGCGCucGCGauuggGUUgCCGuUGCCGCCGUc -3'
miRNA:   3'- gCCGCG--UGCa----CGGaGGC-GCGGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 81422 0.66 0.521757
Target:  5'- -cGCGCGCcgauccGCC-CCGCgaGCCGCCGg -3'
miRNA:   3'- gcCGCGUGca----CGGaGGCG--CGGCGGCg -5'
6520 3' -64.9 NC_001847.1 + 90338 0.66 0.521757
Target:  5'- gGGCGCG-GUGCCgcgcUCgGCGCUuucggGCgGCg -3'
miRNA:   3'- gCCGCGUgCACGG----AGgCGCGG-----CGgCG- -5'
6520 3' -64.9 NC_001847.1 + 78188 0.66 0.521757
Target:  5'- -cGCGUGCGUagGCUUCuCGCGgCgGCUGCg -3'
miRNA:   3'- gcCGCGUGCA--CGGAG-GCGC-GgCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 95760 0.66 0.521757
Target:  5'- cCGGCGC-CG-GCUccCCGaCGgCGUCGCg -3'
miRNA:   3'- -GCCGCGuGCaCGGa-GGC-GCgGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 22165 0.66 0.521757
Target:  5'- cCGGCGCAgCGggccgGCCUgcUCGgGCgagaGCUGCa -3'
miRNA:   3'- -GCCGCGU-GCa----CGGA--GGCgCGg---CGGCG- -5'
6520 3' -64.9 NC_001847.1 + 20448 0.66 0.521757
Target:  5'- uCGGCGCGgaagGCgUCCaGCagGCCGCgGCg -3'
miRNA:   3'- -GCCGCGUgca-CGgAGG-CG--CGGCGgCG- -5'
6520 3' -64.9 NC_001847.1 + 95309 0.66 0.521757
Target:  5'- uGGCGCGCGccacgcaggaaGCgCUCgG-GcCCGCCGCg -3'
miRNA:   3'- gCCGCGUGCa----------CG-GAGgCgC-GGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 124978 0.66 0.521757
Target:  5'- cCGGCGCAgCGggccgGCCUgcUCGgGCgagaGCUGCa -3'
miRNA:   3'- -GCCGCGU-GCa----CGGA--GGCgCGg---CGGCG- -5'
6520 3' -64.9 NC_001847.1 + 101965 0.66 0.521757
Target:  5'- gGGCGCA-GaGCCggCCa-GCCGCUGCa -3'
miRNA:   3'- gCCGCGUgCaCGGa-GGcgCGGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 71879 0.66 0.521757
Target:  5'- gCGaGCGCGCGgcccguuguUGUCUuucccagcCCGUGCgCGCCGUc -3'
miRNA:   3'- -GC-CGCGUGC---------ACGGA--------GGCGCG-GCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 75497 0.66 0.521757
Target:  5'- gGGCGCgaGCG-GgCUCaaaagaGCGCgGUCGCg -3'
miRNA:   3'- gCCGCG--UGCaCgGAGg-----CGCGgCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 30749 0.66 0.521757
Target:  5'- gGGCGgGCGUaGaCCgcggcCCGCuGCagCGCCGCg -3'
miRNA:   3'- gCCGCgUGCA-C-GGa----GGCG-CG--GCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 102361 0.66 0.521757
Target:  5'- uCGGacuCGCGCGUccaGCggCCG-GCCGUCGCg -3'
miRNA:   3'- -GCC---GCGUGCA---CGgaGGCgCGGCGGCG- -5'
6520 3' -64.9 NC_001847.1 + 98175 0.66 0.521757
Target:  5'- gCGGCGCGCccaGU-CCUCUaggcagccguGCGaCgGCCGCg -3'
miRNA:   3'- -GCCGCGUG---CAcGGAGG----------CGC-GgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.