miRNA display CGI

Results 1 - 20 of 1298 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6520	3'	-64.9	NC_001847.1	+	106517	0.8	0.062163
	Target:  5'- aCGGC-CGCGgGCC-CCGCgGCCGCCGCg -3' miRNA:   3'- -GCCGcGUGCaCGGaGGCG-CGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	59878	0.82	0.042801
	Target:  5'- cCGGCGCGCG-GCCUCCGCGUuggcgaggagggcggCGCgCGCg -3' miRNA:   3'- -GCCGCGUGCaCGGAGGCGCG---------------GCG-GCG- -5'
6520	3'	-64.9	NC_001847.1	+	32133	0.82	0.043466
	Target:  5'- cCGGCGCugGgcgccGCCgcgcCCGCGCaCGCCGCg -3' miRNA:   3'- -GCCGCGugCa----CGGa---GGCGCG-GCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	475	0.81	0.050561
	Target:  5'- uCGGCGC-CGUcaugggugcccgcGCCUCCGCGCCuGCUGCc -3' miRNA:   3'- -GCCGCGuGCA-------------CGGAGGCGCGG-CGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	103908	0.81	0.054729
	Target:  5'- gGGCGcCGCG-GCCgcgggCgGCGCCGCCGCg -3' miRNA:   3'- gCCGC-GUGCaCGGa----GgCGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	13122	0.81	0.054729
	Target:  5'- gGGCGCGCGggcgGCg-CCGCGCCGCCuGCc -3' miRNA:   3'- gCCGCGUGCa---CGgaGGCGCGGCGG-CG- -5'
6520	3'	-64.9	NC_001847.1	+	35914	0.81	0.056143
	Target:  5'- aCGGCGCGUGggaGCCUUuguggcggCGCGCCGCCGCg -3' miRNA:   3'- -GCCGCGUGCa--CGGAG--------GCGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	66148	0.8	0.059532
	Target:  5'- aGGCGCACGUGCUggacgugcucucggCCGUGCCcgcgcggGCCGCg -3' miRNA:   3'- gCCGCGUGCACGGa-------------GGCGCGG-------CGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	18532	0.8	0.060602
	Target:  5'- gGGCGCGCc-GCCgUCCGCGCCGCagaGCg -3' miRNA:   3'- gCCGCGUGcaCGG-AGGCGCGGCGg--CG- -5'
6520	3'	-64.9	NC_001847.1	+	15550	0.82	0.042363
	Target:  5'- cCGGUGCGCGcgcgGCCgucgggCCGCgGCCGCCGCu -3' miRNA:   3'- -GCCGCGUGCa---CGGa-----GGCG-CGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	54051	0.83	0.040241
	Target:  5'- uCGGCGCGCGgcgagGCCgccgCCaGCGCCGUCGCc -3' miRNA:   3'- -GCCGCGUGCa----CGGa---GG-CGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	131982	0.83	0.039218
	Target:  5'- aGGCGCugGaggcgGCCcgCCGCGCCGCCGg -3' miRNA:   3'- gCCGCGugCa----CGGa-GGCGCGGCGGCg -5'
6520	3'	-64.9	NC_001847.1	+	61271	0.87	0.019499
	Target:  5'- gCGGCGCGCGcggGCg-CCGCGCCGCCGCc -3' miRNA:   3'- -GCCGCGUGCa--CGgaGGCGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	56834	0.86	0.02108
	Target:  5'- gCGGCGCGCGcGCCgcgCCGCGCCGuCUGCg -3' miRNA:   3'- -GCCGCGUGCaCGGa--GGCGCGGC-GGCG- -5'
6520	3'	-64.9	NC_001847.1	+	134654	0.86	0.023387
	Target:  5'- uGGCGCGCGgccGCC-CCGcCGCCGCCGCu -3' miRNA:   3'- gCCGCGUGCa--CGGaGGC-GCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	38035	0.86	0.024001
	Target:  5'- gGGCGCGC--GCCgCCGCGCCGCCGCu -3' miRNA:   3'- gCCGCGUGcaCGGaGGCGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	37250	0.85	0.025279
	Target:  5'- aCGGCGCGCuGUucGCCaUCCGCGCCGCCGa -3' miRNA:   3'- -GCCGCGUG-CA--CGG-AGGCGCGGCGGCg -5'
6520	3'	-64.9	NC_001847.1	+	133505	0.84	0.0336
	Target:  5'- aGGCGCACGUGuaCCUgCGCGCCGCgGUg -3' miRNA:   3'- gCCGCGUGCAC--GGAgGCGCGGCGgCG- -5'
6520	3'	-64.9	NC_001847.1	+	61893	0.83	0.034478
	Target:  5'- uGcGCGCACG-GCCUcgagcgcgcCCGCGCCGCCGCc -3' miRNA:   3'- gC-CGCGUGCaCGGA---------GGCGCGGCGGCG- -5'
6520	3'	-64.9	NC_001847.1	+	2571	0.83	0.034478
	Target:  5'- uCGGCGCGgGcGCCUgCGCgGCCGCCGCg -3' miRNA:   3'- -GCCGCGUgCaCGGAgGCG-CGGCGGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home