miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6520 5' -51.2 NC_001847.1 + 134370 0.66 0.986305
Target:  5'- cGUGCAGUgaaucGGCGAGG-CGGUgcaggCCAGUg -3'
miRNA:   3'- -CAUGUCG-----UCGCUCUgGUCAa----GGUUAg -5'
6520 5' -51.2 NC_001847.1 + 29363 0.66 0.986305
Target:  5'- -aACAGCGGCGAccgcgcggcGGCCGGagcugCCGcgCg -3'
miRNA:   3'- caUGUCGUCGCU---------CUGGUCaa---GGUuaG- -5'
6520 5' -51.2 NC_001847.1 + 27778 0.66 0.986305
Target:  5'- cGUACAauaaacugcGCGGCGGGugCGGgcucuggCCAuUCg -3'
miRNA:   3'- -CAUGU---------CGUCGCUCugGUCaa-----GGUuAG- -5'
6520 5' -51.2 NC_001847.1 + 16823 0.66 0.986305
Target:  5'- ---gGGCAGCGGuGCCGGguagCCAGUg -3'
miRNA:   3'- caugUCGUCGCUcUGGUCaa--GGUUAg -5'
6520 5' -51.2 NC_001847.1 + 27158 0.66 0.984494
Target:  5'- -cGCAGCcGCGGcGGCCAGc-CCAAUa -3'
miRNA:   3'- caUGUCGuCGCU-CUGGUCaaGGUUAg -5'
6520 5' -51.2 NC_001847.1 + 58074 0.66 0.984494
Target:  5'- --uCGGCGGCGAGcgccgccggaguACCAGcagcUUCCGAUg -3'
miRNA:   3'- cauGUCGUCGCUC------------UGGUC----AAGGUUAg -5'
6520 5' -51.2 NC_001847.1 + 83437 0.66 0.984494
Target:  5'- cUGCAGCAGCGu--CCAGaaCCAc-- -3'
miRNA:   3'- cAUGUCGUCGCucuGGUCaaGGUuag -5'
6520 5' -51.2 NC_001847.1 + 3257 0.66 0.984494
Target:  5'- -gGCGGCAGgGGcGCCGGcgCCGcgCg -3'
miRNA:   3'- caUGUCGUCgCUcUGGUCaaGGUuaG- -5'
6520 5' -51.2 NC_001847.1 + 106070 0.66 0.984494
Target:  5'- -gGCGGCAGgGGcGCCGGcgCCGcgCg -3'
miRNA:   3'- caUGUCGUCgCUcUGGUCaaGGUuaG- -5'
6520 5' -51.2 NC_001847.1 + 29795 0.66 0.982506
Target:  5'- --cCGGCGGCGGGagcgccGCCGGgUCCGAg- -3'
miRNA:   3'- cauGUCGUCGCUC------UGGUCaAGGUUag -5'
6520 5' -51.2 NC_001847.1 + 100228 0.66 0.982506
Target:  5'- -aGCGGCGGCGGGACa----UCGAUCu -3'
miRNA:   3'- caUGUCGUCGCUCUGgucaaGGUUAG- -5'
6520 5' -51.2 NC_001847.1 + 132608 0.66 0.982506
Target:  5'- --cCGGCGGCGGGagcgccGCCGGgUCCGAg- -3'
miRNA:   3'- cauGUCGUCGCUC------UGGUCaAGGUUag -5'
6520 5' -51.2 NC_001847.1 + 29722 0.66 0.982506
Target:  5'- cUGCGGC-GCGGGAgCGGUggCCAAc- -3'
miRNA:   3'- cAUGUCGuCGCUCUgGUCAa-GGUUag -5'
6520 5' -51.2 NC_001847.1 + 131001 0.66 0.982506
Target:  5'- -gACuGCAGCGAuGCCGGgcCCGAg- -3'
miRNA:   3'- caUGuCGUCGCUcUGGUCaaGGUUag -5'
6520 5' -51.2 NC_001847.1 + 58752 0.66 0.982506
Target:  5'- -gACAGCGGCGGcGGCCGcga-CGGUCg -3'
miRNA:   3'- caUGUCGUCGCU-CUGGUcaagGUUAG- -5'
6520 5' -51.2 NC_001847.1 + 37595 0.66 0.982506
Target:  5'- cUGCGGCGGCcgGGGGCCGGc-CCGcgCu -3'
miRNA:   3'- cAUGUCGUCG--CUCUGGUCaaGGUuaG- -5'
6520 5' -51.2 NC_001847.1 + 32939 0.66 0.982506
Target:  5'- --cCGGCGGCGGGGCCGGgggggCgGAg- -3'
miRNA:   3'- cauGUCGUCGCUCUGGUCaa---GgUUag -5'
6520 5' -51.2 NC_001847.1 + 28188 0.66 0.982506
Target:  5'- -gACuGCAGCGAuGCCGGgcCCGAg- -3'
miRNA:   3'- caUGuCGUCGCUcUGGUCaaGGUUag -5'
6520 5' -51.2 NC_001847.1 + 89514 0.66 0.982506
Target:  5'- cUGC-GCAGCGAGGCCcGccCCAacGUCa -3'
miRNA:   3'- cAUGuCGUCGCUCUGGuCaaGGU--UAG- -5'
6520 5' -51.2 NC_001847.1 + 93768 0.66 0.981874
Target:  5'- --cCGGCGGCGGcccggccgccgcuuGGCUGGUUCCGcgCg -3'
miRNA:   3'- cauGUCGUCGCU--------------CUGGUCAAGGUuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.