miRNA display CGI


Results 1 - 20 of 997 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6521 3' -65.3 NC_001847.1 + 115774 0.66 0.485551
Target:  5'- aGCCGGCucGGCcagagcguucGCGGaGCCGCuGCgGCUCc -3'
miRNA:   3'- cCGGCCG--CCG----------UGUC-CGGCG-CG-CGAGu -5'
6521 3' -65.3 NC_001847.1 + 74350 0.66 0.485551
Target:  5'- uGGCgGGCGcCACcaagguGGGCUGCuGCGcCUCGu -3'
miRNA:   3'- -CCGgCCGCcGUG------UCCGGCG-CGC-GAGU- -5'
6521 3' -65.3 NC_001847.1 + 79303 0.66 0.485551
Target:  5'- cGCCGGCuGGCA---GCUGCGCG-UCAu -3'
miRNA:   3'- cCGGCCG-CCGUgucCGGCGCGCgAGU- -5'
6521 3' -65.3 NC_001847.1 + 93059 0.66 0.485551
Target:  5'- uGCCGGCacCGCgAGGCCGaUGCGCcgCAg -3'
miRNA:   3'- cCGGCCGccGUG-UCCGGC-GCGCGa-GU- -5'
6521 3' -65.3 NC_001847.1 + 53957 0.66 0.485551
Target:  5'- cGCCGGCuGGCGCc-GCCGCGaGCc-- -3'
miRNA:   3'- cCGGCCG-CCGUGucCGGCGCgCGagu -5'
6521 3' -65.3 NC_001847.1 + 5107 0.66 0.485551
Target:  5'- aGGUugcuagCGGCGGCcgaaGGGCa-CGCGCUCu -3'
miRNA:   3'- -CCG------GCCGCCGug--UCCGgcGCGCGAGu -5'
6521 3' -65.3 NC_001847.1 + 99495 0.66 0.485551
Target:  5'- cGGCCgccgaGGCGGCGCGGuCCa-GCGCUg- -3'
miRNA:   3'- -CCGG-----CCGCCGUGUCcGGcgCGCGAgu -5'
6521 3' -65.3 NC_001847.1 + 46767 0.66 0.485551
Target:  5'- cGCCGcGCGGgGCcGGuCCGCcGCGCcCGc -3'
miRNA:   3'- cCGGC-CGCCgUGuCC-GGCG-CGCGaGU- -5'
6521 3' -65.3 NC_001847.1 + 81687 0.66 0.485551
Target:  5'- cGCgGGCGaGUGCucGCUGCGCGCg-- -3'
miRNA:   3'- cCGgCCGC-CGUGucCGGCGCGCGagu -5'
6521 3' -65.3 NC_001847.1 + 117291 0.66 0.485551
Target:  5'- -cCCGGCGGCGCuGGCaaCGCGaGCcgCGa -3'
miRNA:   3'- ccGGCCGCCGUGuCCG--GCGCgCGa-GU- -5'
6521 3' -65.3 NC_001847.1 + 22606 0.66 0.485551
Target:  5'- cGGUCGcGUGGCAagcgaguGGCCGCGCaggGCg-- -3'
miRNA:   3'- -CCGGC-CGCCGUgu-----CCGGCGCG---CGagu -5'
6521 3' -65.3 NC_001847.1 + 126041 0.66 0.485551
Target:  5'- gGGCCuGCGGUggcuccgagaGCGGcaccCCGCGCGCguagCAg -3'
miRNA:   3'- -CCGGcCGCCG----------UGUCc---GGCGCGCGa---GU- -5'
6521 3' -65.3 NC_001847.1 + 125419 0.66 0.485551
Target:  5'- cGGUCGcGUGGCAagcgaguGGCCGCGCaggGCg-- -3'
miRNA:   3'- -CCGGC-CGCCGUgu-----CCGGCGCG---CGagu -5'
6521 3' -65.3 NC_001847.1 + 30048 0.66 0.485551
Target:  5'- cGGCCccgccgccgacGGCGGCuuccGCCGCGUGC-CGc -3'
miRNA:   3'- -CCGG-----------CCGCCGugucCGGCGCGCGaGU- -5'
6521 3' -65.3 NC_001847.1 + 99812 0.66 0.485551
Target:  5'- gGGUCGgaGCGGcCGgGGGCCGCuuaGUGCUUu -3'
miRNA:   3'- -CCGGC--CGCC-GUgUCCGGCG---CGCGAGu -5'
6521 3' -65.3 NC_001847.1 + 83028 0.66 0.485551
Target:  5'- cGCCGcCGGCcCGcGGCCGCuaguGCGCUUn -3'
miRNA:   3'- cCGGCcGCCGuGU-CCGGCG----CGCGAGu -5'
6521 3' -65.3 NC_001847.1 + 99914 0.66 0.485551
Target:  5'- cGCCGGCcGCcuGCAGcacguCCGCGCGCa-- -3'
miRNA:   3'- cCGGCCGcCG--UGUCc----GGCGCGCGagu -5'
6521 3' -65.3 NC_001847.1 + 73607 0.66 0.485551
Target:  5'- uGCCGGCGGCucGCAGaGCCcCGUGaccuuugucggcCUCGu -3'
miRNA:   3'- cCGGCCGCCG--UGUC-CGGcGCGC------------GAGU- -5'
6521 3' -65.3 NC_001847.1 + 132861 0.66 0.485551
Target:  5'- cGGCCccgccgccgacGGCGGCuuccGCCGCGUGC-CGc -3'
miRNA:   3'- -CCGG-----------CCGCCGugucCGGCGCGCGaGU- -5'
6521 3' -65.3 NC_001847.1 + 39883 0.66 0.485551
Target:  5'- cGGCCcG-GGUcCAGGCCGgGCGUgcgCAa -3'
miRNA:   3'- -CCGGcCgCCGuGUCCGGCgCGCGa--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.