miRNA display CGI

Results 1 - 20 of 997 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6521	3'	-65.3	NC_001847.1	+	5395	1.09	0.000337
	Target:  5'- cGGCCGGCGGCACAGGCCGCGCGCUCAg -3' miRNA:   3'- -CCGGCCGCCGUGUCCGGCGCGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	93292	0.86	0.020623
	Target:  5'- uGUCGGCGGCgcGCAGGCCGCGCGCg-- -3' miRNA:   3'- cCGGCCGCCG--UGUCCGGCGCGCGagu -5'
6521	3'	-65.3	NC_001847.1	+	1930	0.84	0.028955
	Target:  5'- cGGCgCGGCGGCcacuCGGGCCGCcgGCGCUCGu -3' miRNA:   3'- -CCG-GCCGCCGu---GUCCGGCG--CGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	104743	0.84	0.028955
	Target:  5'- cGGCgCGGCGGCcacuCGGGCCGCcgGCGCUCGu -3' miRNA:   3'- -CCG-GCCGCCGu---GUCCGGCG--CGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	116401	0.83	0.034737
	Target:  5'- cGG-CGGCGGCGCucugggccccGGGCCGCGCGCUUg -3' miRNA:   3'- -CCgGCCGCCGUG----------UCCGGCGCGCGAGu -5'
6521	3'	-65.3	NC_001847.1	+	73765	0.82	0.03565
	Target:  5'- cGGgCGGCGGCGCGGGCCGCuacgagcgcgggGCGCUgGa -3' miRNA:   3'- -CCgGCCGCCGUGUCCGGCG------------CGCGAgU- -5'
6521	3'	-65.3	NC_001847.1	+	120694	0.81	0.041648
	Target:  5'- cGCCGaGCaGCGC-GGCCGCGCGCUCGg -3' miRNA:   3'- cCGGC-CGcCGUGuCCGGCGCGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	106291	0.81	0.042739
	Target:  5'- cGCCGGCGucgcGCGCGcGGCCGCGCGUUCu -3' miRNA:   3'- cCGGCCGC----CGUGU-CCGGCGCGCGAGu -5'
6521	3'	-65.3	NC_001847.1	+	102068	0.81	0.046183
	Target:  5'- cGGCagcaagGGCaGGCGCGGGCCGCGCGCg-- -3' miRNA:   3'- -CCGg-----CCG-CCGUGUCCGGCGCGCGagu -5'
6521	3'	-65.3	NC_001847.1	+	134519	0.81	0.047391
	Target:  5'- gGGCgGGgggaGGCGCGGGCCGCGCGC-CGc -3' miRNA:   3'- -CCGgCCg---CCGUGUCCGGCGCGCGaGU- -5'
6521	3'	-65.3	NC_001847.1	+	31706	0.81	0.047391
	Target:  5'- gGGCgGGgggaGGCGCGGGCCGCGCGC-CGc -3' miRNA:   3'- -CCGgCCg---CCGUGUCCGGCGCGCGaGU- -5'
6521	3'	-65.3	NC_001847.1	+	57663	0.81	0.048628
	Target:  5'- gGGCCGGCgGGC-CGGGCCGgGCGCcCGg -3' miRNA:   3'- -CCGGCCG-CCGuGUCCGGCgCGCGaGU- -5'
6521	3'	-65.3	NC_001847.1	+	102309	0.81	0.048628
	Target:  5'- cGGUcuCGGCGGCcacGCGGGCCucGCGCGCUCGc -3' miRNA:   3'- -CCG--GCCGCCG---UGUCCGG--CGCGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	103379	0.8	0.049898
	Target:  5'- uGGCCGGCGcGCGCGGGUgcacgcugaccaCGCGcCGCUCGa -3' miRNA:   3'- -CCGGCCGC-CGUGUCCG------------GCGC-GCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	32672	0.8	0.051199
	Target:  5'- cGCCGGCGGCGCGGGCC---CGCUCGa -3' miRNA:   3'- cCGGCCGCCGUGUCCGGcgcGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	101092	0.8	0.051199
	Target:  5'- gGGUCGGCGGgGCGGGCgGgCGCGUUCGc -3' miRNA:   3'- -CCGGCCGCCgUGUCCGgC-GCGCGAGU- -5'
6521	3'	-65.3	NC_001847.1	+	31436	0.8	0.051331
	Target:  5'- cGGCCGGCGGCcgcggcggccccggcGCGGGCCGCcgccgcgcguggagGUGCUCu -3' miRNA:   3'- -CCGGCCGCCG---------------UGUCCGGCG--------------CGCGAGu -5'
6521	3'	-65.3	NC_001847.1	+	134249	0.8	0.051331
	Target:  5'- cGGCCGGCGGCcgcggcggccccggcGCGGGCCGCcgccgcgcguggagGUGCUCu -3' miRNA:   3'- -CCGGCCGCCG---------------UGUCCGGCG--------------CGCGAGu -5'
6521	3'	-65.3	NC_001847.1	+	97832	0.8	0.052534
	Target:  5'- uGCuCGGCGcGCGCGGGCUGCGCGCg-- -3' miRNA:   3'- cCG-GCCGC-CGUGUCCGGCGCGCGagu -5'
6521	3'	-65.3	NC_001847.1	+	68931	0.8	0.053903
	Target:  5'- cGGCgCGGCGGcCGCGGGCUGCGC-CUCc -3' miRNA:   3'- -CCG-GCCGCC-GUGUCCGGCGCGcGAGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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