miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6521 5' -56.5 NC_001847.1 + 104601 0.66 0.873043
Target:  5'- ---gAGCCGCGCGacgaGCUCgGCGAc -3'
miRNA:   3'- ccaaUCGGCGCGCagagCGAGgUGUU- -5'
6521 5' -56.5 NC_001847.1 + 10063 0.66 0.873043
Target:  5'- -cUUGGCCGCGCGggcccagCGCcccgCCGCGc -3'
miRNA:   3'- ccAAUCGGCGCGCaga----GCGa---GGUGUu -5'
6521 5' -56.5 NC_001847.1 + 8927 0.66 0.873043
Target:  5'- aGggGGCCGCcuccGCGUUgaGCUCUACGAc -3'
miRNA:   3'- cCaaUCGGCG----CGCAGagCGAGGUGUU- -5'
6521 5' -56.5 NC_001847.1 + 92022 0.66 0.873043
Target:  5'- ---cAGCCGCGagagC-CGCUCCACGu -3'
miRNA:   3'- ccaaUCGGCGCgca-GaGCGAGGUGUu -5'
6521 5' -56.5 NC_001847.1 + 7896 0.66 0.873043
Target:  5'- --cUAGCCGCGCGgggCgCGCggcggCCGCc- -3'
miRNA:   3'- ccaAUCGGCGCGCa--GaGCGa----GGUGuu -5'
6521 5' -56.5 NC_001847.1 + 104833 0.66 0.873043
Target:  5'- cGGggGGgCGgGCGUCcgcaGCUUCACAc -3'
miRNA:   3'- -CCaaUCgGCgCGCAGag--CGAGGUGUu -5'
6521 5' -56.5 NC_001847.1 + 69686 0.66 0.873043
Target:  5'- cGUUGGgCGCGgGgccggcgCUCGgUCCGCGg -3'
miRNA:   3'- cCAAUCgGCGCgCa------GAGCgAGGUGUu -5'
6521 5' -56.5 NC_001847.1 + 31191 0.66 0.865565
Target:  5'- ---gAGCCGCGCGcCgaggCGCcgCCGCu- -3'
miRNA:   3'- ccaaUCGGCGCGCaGa---GCGa-GGUGuu -5'
6521 5' -56.5 NC_001847.1 + 122769 0.66 0.865565
Target:  5'- cGGUccgGGCCGUGCG-CUCcagcagGCUCCGg-- -3'
miRNA:   3'- -CCAa--UCGGCGCGCaGAG------CGAGGUguu -5'
6521 5' -56.5 NC_001847.1 + 134004 0.66 0.865565
Target:  5'- ---gAGCCGCGCGcCgaggCGCcgCCGCu- -3'
miRNA:   3'- ccaaUCGGCGCGCaGa---GCGa-GGUGuu -5'
6521 5' -56.5 NC_001847.1 + 110036 0.66 0.857872
Target:  5'- ---aGGUCGCGCGaaUCUUGCUcaaCCGCGGu -3'
miRNA:   3'- ccaaUCGGCGCGC--AGAGCGA---GGUGUU- -5'
6521 5' -56.5 NC_001847.1 + 105343 0.66 0.857872
Target:  5'- uGGgc-GCCgGgGCG-CUCGCgUCCACAAa -3'
miRNA:   3'- -CCaauCGG-CgCGCaGAGCG-AGGUGUU- -5'
6521 5' -56.5 NC_001847.1 + 19441 0.66 0.849971
Target:  5'- ---aGGCCGCGCGcccgCUgccgggccagcCGCUCCGCc- -3'
miRNA:   3'- ccaaUCGGCGCGCa---GA-----------GCGAGGUGuu -5'
6521 5' -56.5 NC_001847.1 + 109947 0.66 0.841867
Target:  5'- ---cGGCCGCGCGcggggCUCGCUggCCAg-- -3'
miRNA:   3'- ccaaUCGGCGCGCa----GAGCGA--GGUguu -5'
6521 5' -56.5 NC_001847.1 + 50052 0.66 0.841867
Target:  5'- cGGUggcGGCCGCGgGUC-CGCg-CGCGg -3'
miRNA:   3'- -CCAa--UCGGCGCgCAGaGCGagGUGUu -5'
6521 5' -56.5 NC_001847.1 + 53446 0.66 0.841867
Target:  5'- ---cGGCgCGCGCGcCUggCGCUCUACGg -3'
miRNA:   3'- ccaaUCG-GCGCGCaGA--GCGAGGUGUu -5'
6521 5' -56.5 NC_001847.1 + 105881 0.66 0.841867
Target:  5'- gGGUgcGCCgccaGCGCGUCcggCGCgcaggCCGCGg -3'
miRNA:   3'- -CCAauCGG----CGCGCAGa--GCGa----GGUGUu -5'
6521 5' -56.5 NC_001847.1 + 113029 0.66 0.841867
Target:  5'- ----cGCCGCGCGUCUgggaCGCcggcagcagCCGCAGc -3'
miRNA:   3'- ccaauCGGCGCGCAGA----GCGa--------GGUGUU- -5'
6521 5' -56.5 NC_001847.1 + 3068 0.66 0.841867
Target:  5'- gGGUgcGCCgccaGCGCGUCcggCGCgcaggCCGCGg -3'
miRNA:   3'- -CCAauCGG----CGCGCAGa--GCGa----GGUGUu -5'
6521 5' -56.5 NC_001847.1 + 39325 0.66 0.833569
Target:  5'- ---aAGCCGCGCugGUCgCGgaCCACGAu -3'
miRNA:   3'- ccaaUCGGCGCG--CAGaGCgaGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.