miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6522 3' -56.6 NC_001847.1 + 37283 0.66 0.867314
Target:  5'- --cGGCGUCGACuggagcauuguauaaGGCGCGCgcagcccgCGCGc- -3'
miRNA:   3'- uuuUCGCAGUUG---------------CCGCGCGa-------GCGCcu -5'
6522 3' -56.6 NC_001847.1 + 83148 0.66 0.86428
Target:  5'- --cGGCGUCG--GGCGCGUcCGCGa- -3'
miRNA:   3'- uuuUCGCAGUugCCGCGCGaGCGCcu -5'
6522 3' -56.6 NC_001847.1 + 102903 0.66 0.86428
Target:  5'- ---uGCGUCAGCGGCuaucgacgccGCGUgCGCcuGGAc -3'
miRNA:   3'- uuuuCGCAGUUGCCG----------CGCGaGCG--CCU- -5'
6522 3' -56.6 NC_001847.1 + 27211 0.66 0.86428
Target:  5'- -cGGGCG-CGcCGGgGCGCUCgagcuGCGGGu -3'
miRNA:   3'- uuUUCGCaGUuGCCgCGCGAG-----CGCCU- -5'
6522 3' -56.6 NC_001847.1 + 38075 0.66 0.86428
Target:  5'- ---cGCG-CGGCGGC-CGC-CGCGGu -3'
miRNA:   3'- uuuuCGCaGUUGCCGcGCGaGCGCCu -5'
6522 3' -56.6 NC_001847.1 + 45797 0.66 0.86428
Target:  5'- --cGGCGUCGGCGGC-CGagacuacuaGCGGGa -3'
miRNA:   3'- uuuUCGCAGUUGCCGcGCgag------CGCCU- -5'
6522 3' -56.6 NC_001847.1 + 43815 0.66 0.86428
Target:  5'- cGAGGGCGaCGGCGGCcgcuucuuugccGCGCUgGCGc- -3'
miRNA:   3'- -UUUUCGCaGUUGCCG------------CGCGAgCGCcu -5'
6522 3' -56.6 NC_001847.1 + 27686 0.66 0.86428
Target:  5'- ---cGCGUCGGgcugaGGCGCGCgagCGcCGGc -3'
miRNA:   3'- uuuuCGCAGUUg----CCGCGCGa--GC-GCCu -5'
6522 3' -56.6 NC_001847.1 + 20893 0.66 0.86428
Target:  5'- --cGGCugggCAGCGaGCGCG-UCGCGGGc -3'
miRNA:   3'- uuuUCGca--GUUGC-CGCGCgAGCGCCU- -5'
6522 3' -56.6 NC_001847.1 + 1929 0.66 0.86428
Target:  5'- cGAGGC-UUAGcCGGCGCGCggCGCaGAg -3'
miRNA:   3'- uUUUCGcAGUU-GCCGCGCGa-GCGcCU- -5'
6522 3' -56.6 NC_001847.1 + 35974 0.66 0.86428
Target:  5'- cGAGGGCGcCAA-GGCGCGCgcagcCGCGc- -3'
miRNA:   3'- -UUUUCGCaGUUgCCGCGCGa----GCGCcu -5'
6522 3' -56.6 NC_001847.1 + 2102 0.66 0.86428
Target:  5'- ---cGCG-CGGCGGCGgGC-CGCGa- -3'
miRNA:   3'- uuuuCGCaGUUGCCGCgCGaGCGCcu -5'
6522 3' -56.6 NC_001847.1 + 130226 0.66 0.86428
Target:  5'- gGGAAGCG-CGGCGGCccuaacgacCGCgUGCGGAu -3'
miRNA:   3'- -UUUUCGCaGUUGCCGc--------GCGaGCGCCU- -5'
6522 3' -56.6 NC_001847.1 + 105182 0.66 0.86428
Target:  5'- ---cGCGUCGGCGGCGgCGgcuuUUCGcCGGc -3'
miRNA:   3'- uuuuCGCAGUUGCCGC-GC----GAGC-GCCu -5'
6522 3' -56.6 NC_001847.1 + 130499 0.66 0.86428
Target:  5'- ---cGCGUCGGgcugaGGCGCGCgagCGcCGGc -3'
miRNA:   3'- uuuuCGCAGUUg----CCGCGCGa--GC-GCCu -5'
6522 3' -56.6 NC_001847.1 + 32380 0.66 0.86428
Target:  5'- --cGGCGUCGcggGCGuCGCGCcuugCGUGGGg -3'
miRNA:   3'- uuuUCGCAGU---UGCcGCGCGa---GCGCCU- -5'
6522 3' -56.6 NC_001847.1 + 47872 0.66 0.86428
Target:  5'- -cGGGCGcgcgCAGCGcGCGCGCgcccgcgCGcCGGGg -3'
miRNA:   3'- uuUUCGCa---GUUGC-CGCGCGa------GC-GCCU- -5'
6522 3' -56.6 NC_001847.1 + 5167 0.66 0.86428
Target:  5'- -cAGGCaUCGGCGGCGauUUCGgGGAa -3'
miRNA:   3'- uuUUCGcAGUUGCCGCgcGAGCgCCU- -5'
6522 3' -56.6 NC_001847.1 + 2369 0.66 0.86428
Target:  5'- ---cGCGUCGGCGGCGgCGgcuuUUCGcCGGc -3'
miRNA:   3'- uuuuCGCAGUUGCCGC-GC----GAGC-GCCu -5'
6522 3' -56.6 NC_001847.1 + 104915 0.66 0.86428
Target:  5'- ---cGCG-CGGCGGCGgGC-CGCGa- -3'
miRNA:   3'- uuuuCGCaGUUGCCGCgCGaGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.