miRNA display CGI

Results 1 - 20 of 1482 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6522	5'	-66.5	NC_001847.1	+	21005	0.66	0.411664
	Target:  5'- gGCaCCGC---GCGCGGCuguGCGGGCGaCCc -3' miRNA:   3'- gCG-GGCGcucCGCGCCG---CGCUCGC-GG- -5'
6522	5'	-66.5	NC_001847.1	+	124599	0.66	0.419816
	Target:  5'- gCGCCgGCcGGGCGCGGgucccCGGGC-CCg -3' miRNA:   3'- -GCGGgCGcUCCGCGCCgc---GCUCGcGG- -5'
6522	5'	-66.5	NC_001847.1	+	53420	0.66	0.425579
	Target:  5'- gGCUgGa-GGGCGCgugccgcuuccaccGGCGCGcGCGCCu -3' miRNA:   3'- gCGGgCgcUCCGCG--------------CCGCGCuCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	69267	0.66	0.411664
	Target:  5'- gGCUgGCGGcGGcCGCGGgcuuccucuaCGCGGGCGUg -3' miRNA:   3'- gCGGgCGCU-CC-GCGCC----------GCGCUCGCGg -5'
6522	5'	-66.5	NC_001847.1	+	128415	0.66	0.461987
	Target:  5'- aCGCCCGCuauguuGAGGgccagacuacagUGCGcucggcccuGCGCGcGCGCCc -3' miRNA:   3'- -GCGGGCG------CUCC------------GCGC---------CGCGCuCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	117410	0.66	0.411664
	Target:  5'- uGCgCGCGGuGGaCGCuucGCGCGGcuGCGCCc -3' miRNA:   3'- gCGgGCGCU-CC-GCGc--CGCGCU--CGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	33053	0.66	0.41736
	Target:  5'- gCGCUCGCggccGAGGCGCuGcggcaguacuuucuGCGCGGcGCGCa -3' miRNA:   3'- -GCGGGCG----CUCCGCG-C--------------CGCGCU-CGCGg -5'
6522	5'	-66.5	NC_001847.1	+	70794	0.66	0.411664
	Target:  5'- gGCCCuaGAGaaGCGCGuGUaccaggccacGCGGGUGCCc -3' miRNA:   3'- gCGGGcgCUC--CGCGC-CG----------CGCUCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	92419	0.66	0.411664
	Target:  5'- cCGCCCGCGcGGcCGCc-CGCc-GCGCCa -3' miRNA:   3'- -GCGGGCGCuCC-GCGccGCGcuCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	6432	0.66	0.411664
	Target:  5'- aGuCCCGaGGGGUuagGCGGCGCGgcgacGGCGUa -3' miRNA:   3'- gC-GGGCgCUCCG---CGCCGCGC-----UCGCGg -5'
6522	5'	-66.5	NC_001847.1	+	37215	0.66	0.423103
	Target:  5'- gGUgCCGCuuGGCgGCGGCGCGgacgacccggcggacGGCGCg -3' miRNA:   3'- gCG-GGCGcuCCG-CGCCGCGC---------------UCGCGg -5'
6522	5'	-66.5	NC_001847.1	+	54435	0.66	0.419816
	Target:  5'- gGCCCGgGcagagacgagGGGgGCGGgGaCGAGC-CCg -3' miRNA:   3'- gCGGGCgC----------UCCgCGCCgC-GCUCGcGG- -5'
6522	5'	-66.5	NC_001847.1	+	72912	0.66	0.410854
	Target:  5'- gCGCCa-CGAGGCggucgGCGGCGuCGGGUuuacgcucacgcaGCCg -3' miRNA:   3'- -GCGGgcGCUCCG-----CGCCGC-GCUCG-------------CGG- -5'
6522	5'	-66.5	NC_001847.1	+	134375	0.66	0.419816
	Target:  5'- gGCCgGCGccGC-CGGCgGCGGGCcgGCCu -3' miRNA:   3'- gCGGgCGCucCGcGCCG-CGCUCG--CGG- -5'
6522	5'	-66.5	NC_001847.1	+	11956	0.66	0.411664
	Target:  5'- aCGCCgcuaGgGAuGG-GCGGC-UGAGCGCCg -3' miRNA:   3'- -GCGGg---CgCU-CCgCGCCGcGCUCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	54806	0.66	0.411664
	Target:  5'- cCGCgCCGCGcuGGCGa-GCGCGGGCa-- -3' miRNA:   3'- -GCG-GGCGCu-CCGCgcCGCGCUCGcgg -5'
6522	5'	-66.5	NC_001847.1	+	50563	0.66	0.423103
	Target:  5'- uGCCCGCagcugcuGGCGCGcaugcuguucuaccuGgagcgcugcgaCGCGGGCGCCu -3' miRNA:   3'- gCGGGCGcu-----CCGCGC---------------C-----------GCGCUCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	114523	0.66	0.419816
	Target:  5'- uGCa-GCGGucGGCGCGGCGCGGGaa-Ca -3' miRNA:   3'- gCGggCGCU--CCGCGCCGCGCUCgcgG- -5'
6522	5'	-66.5	NC_001847.1	+	16783	0.66	0.423103
	Target:  5'- gGCCgGgCGAGGCgucguacgugGCGGuCGCGgagaacucgggcagcGGUGCCg -3' miRNA:   3'- gCGGgC-GCUCCG----------CGCC-GCGC---------------UCGCGG- -5'
6522	5'	-66.5	NC_001847.1	+	56460	0.66	0.419816
	Target:  5'- uGCUCGCu-GGCcaaGUGGCGCGAG-GCg -3' miRNA:   3'- gCGGGCGcuCCG---CGCCGCGCUCgCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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