miRNA display CGI


Results 1 - 20 of 1760 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6524 3' -63.2 NC_001847.1 + 5492 0.65 0.583826
Target:  5'- cGGCCGcCGCAaccucgaccgccacUUCGUCGGgGuCUAGgGCg -3'
miRNA:   3'- -CCGGC-GCGU--------------AGGCGGUCgC-GGUCgCG- -5'
6524 3' -63.2 NC_001847.1 + 77911 0.66 0.57798
Target:  5'- cGGUgGCGCAccucucggcgacgagCC-CCGGCGgCCGGgGCg -3'
miRNA:   3'- -CCGgCGCGUa--------------GGcGGUCGC-GGUCgCG- -5'
6524 3' -63.2 NC_001847.1 + 104229 0.66 0.577006
Target:  5'- cGGCaCGgGCA-CCGCgGuGCGCgggcccaGGCGCg -3'
miRNA:   3'- -CCG-GCgCGUaGGCGgU-CGCGg------UCGCG- -5'
6524 3' -63.2 NC_001847.1 + 80037 0.66 0.577006
Target:  5'- gGGUCG-GCGUCauCGCCGcCGCCgaGGUGCg -3'
miRNA:   3'- -CCGGCgCGUAG--GCGGUcGCGG--UCGCG- -5'
6524 3' -63.2 NC_001847.1 + 64408 0.66 0.577006
Target:  5'- aGGuCCGCcuuuacGCG--CGCCAcUGCCGGCGCg -3'
miRNA:   3'- -CC-GGCG------CGUagGCGGUcGCGGUCGCG- -5'
6524 3' -63.2 NC_001847.1 + 22215 0.66 0.577006
Target:  5'- aGCa-CGCGUCCGUgGGCG-UGGCGCc -3'
miRNA:   3'- cCGgcGCGUAGGCGgUCGCgGUCGCG- -5'
6524 3' -63.2 NC_001847.1 + 72989 0.66 0.577006
Target:  5'- cGGCgGC-CuacgCCGCC-GCgGCCAuGCGCa -3'
miRNA:   3'- -CCGgCGcGua--GGCGGuCG-CGGU-CGCG- -5'
6524 3' -63.2 NC_001847.1 + 52070 0.66 0.577006
Target:  5'- uGGgCGgGCAccuucgCCGCCAGCaaCCucguGCGCu -3'
miRNA:   3'- -CCgGCgCGUa-----GGCGGUCGc-GGu---CGCG- -5'
6524 3' -63.2 NC_001847.1 + 32599 0.66 0.577006
Target:  5'- gGGaUCGUgcuGCAUCUGCCuggacGCGaucaCCGGCGCg -3'
miRNA:   3'- -CC-GGCG---CGUAGGCGGu----CGC----GGUCGCG- -5'
6524 3' -63.2 NC_001847.1 + 53867 0.66 0.577006
Target:  5'- uGGCgGCGCcgaCCGCCgcGGgGgCGGCGg -3'
miRNA:   3'- -CCGgCGCGua-GGCGG--UCgCgGUCGCg -5'
6524 3' -63.2 NC_001847.1 + 66109 0.66 0.577006
Target:  5'- cGCCGUGCAuggccucuuUCCGCCuGgacuUGCUcgaggaGGCGCa -3'
miRNA:   3'- cCGGCGCGU---------AGGCGGuC----GCGG------UCGCG- -5'
6524 3' -63.2 NC_001847.1 + 47052 0.66 0.577006
Target:  5'- aGCCGCGCcaCCGCCgacAGCuCCAG-GUg -3'
miRNA:   3'- cCGGCGCGuaGGCGG---UCGcGGUCgCG- -5'
6524 3' -63.2 NC_001847.1 + 4953 0.66 0.577006
Target:  5'- cGCCGCcCGUCUcuucagGCCgGGCGCCcGCGg -3'
miRNA:   3'- cCGGCGcGUAGG------CGG-UCGCGGuCGCg -5'
6524 3' -63.2 NC_001847.1 + 86432 0.66 0.577006
Target:  5'- uGGCgGCGC-UgCG-CGGCGCgGGCaGCg -3'
miRNA:   3'- -CCGgCGCGuAgGCgGUCGCGgUCG-CG- -5'
6524 3' -63.2 NC_001847.1 + 32515 0.66 0.577006
Target:  5'- uGGCCGCGUAcacgcggCUGUCGGagGCgAuGCGCg -3'
miRNA:   3'- -CCGGCGCGUa------GGCGGUCg-CGgU-CGCG- -5'
6524 3' -63.2 NC_001847.1 + 43430 0.66 0.577006
Target:  5'- gGGCCuCGCGU-CGCgCGGUGCCcgagAGCGa -3'
miRNA:   3'- -CCGGcGCGUAgGCG-GUCGCGG----UCGCg -5'
6524 3' -63.2 NC_001847.1 + 85548 0.66 0.577006
Target:  5'- cGCCGaGCucCCGCU-GCGCCcaGGCGCc -3'
miRNA:   3'- cCGGCgCGuaGGCGGuCGCGG--UCGCG- -5'
6524 3' -63.2 NC_001847.1 + 41719 0.66 0.577006
Target:  5'- gGGCCaggGCGUGUa---CAGCGCCGuGCGCu -3'
miRNA:   3'- -CCGG---CGCGUAggcgGUCGCGGU-CGCG- -5'
6524 3' -63.2 NC_001847.1 + 125028 0.66 0.577006
Target:  5'- aGCa-CGCGUCCGUgGGCG-UGGCGCc -3'
miRNA:   3'- cCGgcGCGUAGGCGgUCGCgGUCGCG- -5'
6524 3' -63.2 NC_001847.1 + 1416 0.66 0.577006
Target:  5'- cGGCaCGgGCA-CCGCgGuGCGCgggcccaGGCGCg -3'
miRNA:   3'- -CCG-GCgCGUaGGCGgU-CGCGg------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.