miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6524 5' -57.5 NC_001847.1 + 85597 0.66 0.813845
Target:  5'- -cGGGCg--CGCCggcaaaggcgcuaaaGCCAAagcgccGGCGCGCu -3'
miRNA:   3'- aaCCCGaaaGCGG---------------UGGUU------CCGUGCGc -5'
6524 5' -57.5 NC_001847.1 + 134787 0.66 0.810301
Target:  5'- -gGGGCgg--GCC-CCGGGGCGCGa- -3'
miRNA:   3'- aaCCCGaaagCGGuGGUUCCGUGCgc -5'
6524 5' -57.5 NC_001847.1 + 14169 0.66 0.810301
Target:  5'- -gGGGCg---GCCGCgcuaAAGGCACGgGa -3'
miRNA:   3'- aaCCCGaaagCGGUGg---UUCCGUGCgC- -5'
6524 5' -57.5 NC_001847.1 + 31411 0.66 0.810301
Target:  5'- -cGGGCUUcccggCGCCggcgggcggcgGCCGGcGGC-CGCGg -3'
miRNA:   3'- aaCCCGAAa----GCGG-----------UGGUU-CCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 5732 0.66 0.810301
Target:  5'- -cGGGCg-UCG-CAUCAGGGgACGCa -3'
miRNA:   3'- aaCCCGaaAGCgGUGGUUCCgUGCGc -5'
6524 5' -57.5 NC_001847.1 + 79610 0.66 0.810301
Target:  5'- -gGGGCguugUCGCCGgucgccCCGcGGCGgGCGc -3'
miRNA:   3'- aaCCCGaa--AGCGGU------GGUuCCGUgCGC- -5'
6524 5' -57.5 NC_001847.1 + 86383 0.66 0.810301
Target:  5'- -cGGGC---CGCgGCgGcGGGCGCGCGg -3'
miRNA:   3'- aaCCCGaaaGCGgUGgU-UCCGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 97828 0.66 0.810301
Target:  5'- -cGGGCgcgUGCCGCCAcacGGcuaGCACGuCGg -3'
miRNA:   3'- aaCCCGaaaGCGGUGGU---UC---CGUGC-GC- -5'
6524 5' -57.5 NC_001847.1 + 3711 0.66 0.810301
Target:  5'- -cGGGCcccgCgGCCGCCGcguaGCGCGCGg -3'
miRNA:   3'- aaCCCGaaa-G-CGGUGGUuc--CGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 62547 0.66 0.810301
Target:  5'- -aGcGGCUgccccUUCuGCCGCCGcGGC-CGCGg -3'
miRNA:   3'- aaC-CCGA-----AAG-CGGUGGUuCCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 45153 0.66 0.810301
Target:  5'- -gGGGUgca-GCC-CCGcGGCGCGCa -3'
miRNA:   3'- aaCCCGaaagCGGuGGUuCCGUGCGc -5'
6524 5' -57.5 NC_001847.1 + 100642 0.66 0.810301
Target:  5'- --uGGCUg-CGgCGCCAGGGC-CGCGc -3'
miRNA:   3'- aacCCGAaaGCgGUGGUUCCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 31974 0.66 0.810301
Target:  5'- -gGGGCgg--GCC-CCGGGGCGCGa- -3'
miRNA:   3'- aaCCCGaaagCGGuGGUUCCGUGCgc -5'
6524 5' -57.5 NC_001847.1 + 18746 0.66 0.810301
Target:  5'- -gGGGCccagagCGCCGCCGccgcggcuaAGGCggcggccgacaGCGCGa -3'
miRNA:   3'- aaCCCGaaa---GCGGUGGU---------UCCG-----------UGCGC- -5'
6524 5' -57.5 NC_001847.1 + 106524 0.66 0.810301
Target:  5'- -cGGGCcccgCgGCCGCCGcguaGCGCGCGg -3'
miRNA:   3'- aaCCCGaaa-G-CGGUGGUuc--CGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 91239 0.66 0.810301
Target:  5'- -gGGGUc--CGCCugCAGcucGCACGCGg -3'
miRNA:   3'- aaCCCGaaaGCGGugGUUc--CGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 134224 0.66 0.810301
Target:  5'- -cGGGCUUcccggCGCCggcgggcggcgGCCGGcGGC-CGCGg -3'
miRNA:   3'- aaCCCGAAa----GCGG-----------UGGUU-CCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 123530 0.66 0.810301
Target:  5'- -cGGGCUcg-GCUaagGCCAAGGC-CGCu -3'
miRNA:   3'- aaCCCGAaagCGG---UGGUUCCGuGCGc -5'
6524 5' -57.5 NC_001847.1 + 36628 0.66 0.810301
Target:  5'- -gGGGCaUUCGCCGCUGAauUugGCGu -3'
miRNA:   3'- aaCCCGaAAGCGGUGGUUccGugCGC- -5'
6524 5' -57.5 NC_001847.1 + 96346 0.66 0.808519
Target:  5'- -cGGGCUggcgugcgacgCGCUGCCGgcAGGgACGCu -3'
miRNA:   3'- aaCCCGAaa---------GCGGUGGU--UCCgUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.