miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6524 5' -57.5 NC_001847.1 + 11308 0.73 0.390028
Target:  5'- aUGGGCg--CGcCCGCCGAGGC-CgGCGg -3'
miRNA:   3'- aACCCGaaaGC-GGUGGUUCCGuG-CGC- -5'
6524 5' -57.5 NC_001847.1 + 65244 0.74 0.349051
Target:  5'- -cGGcGCUUUucCGCCACCcGGGCcCGCGg -3'
miRNA:   3'- aaCC-CGAAA--GCGGUGGuUCCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 105784 0.74 0.349051
Target:  5'- --cGGCggcagCGCCGCCGGGGcCGCGCGc -3'
miRNA:   3'- aacCCGaaa--GCGGUGGUUCC-GUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 106592 0.74 0.349051
Target:  5'- -cGGGUgucgcccgCGCCGCCgAAGcGCACGCGg -3'
miRNA:   3'- aaCCCGaaa-----GCGGUGG-UUC-CGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 103167 0.74 0.356196
Target:  5'- -cGGGCUUcgCGCC-CCGGGGCccgccccGCGCGc -3'
miRNA:   3'- aaCCCGAAa-GCGGuGGUUCCG-------UGCGC- -5'
6524 5' -57.5 NC_001847.1 + 82885 0.74 0.356996
Target:  5'- -cGGGCg--CGCCgcaGCCAAgccgcGGCGCGCGg -3'
miRNA:   3'- aaCCCGaaaGCGG---UGGUU-----CCGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 10036 0.74 0.361824
Target:  5'- -cGGGCUUcUCGCCGCCGcgaacgacaucuuGGCcGCGCGg -3'
miRNA:   3'- aaCCCGAA-AGCGGUGGUu------------CCG-UGCGC- -5'
6524 5' -57.5 NC_001847.1 + 58263 0.74 0.365067
Target:  5'- -aGGGUUcggCGCCACCcGGGCACgGCa -3'
miRNA:   3'- aaCCCGAaa-GCGGUGGuUCCGUG-CGc -5'
6524 5' -57.5 NC_001847.1 + 21874 0.73 0.390028
Target:  5'- -gGGGCUgcggcgCGCUGCCGAGGCcgagccCGCGa -3'
miRNA:   3'- aaCCCGAaa----GCGGUGGUUCCGu-----GCGC- -5'
6524 5' -57.5 NC_001847.1 + 46071 0.74 0.333541
Target:  5'- -cGGGCgaaagagCGCCGCCGAaacccGGCGCGCc -3'
miRNA:   3'- aaCCCGaaa----GCGGUGGUU-----CCGUGCGc -5'
6524 5' -57.5 NC_001847.1 + 33519 0.74 0.325978
Target:  5'- -cGGGCgc-CGCCGCgGAGGCgccggGCGCGg -3'
miRNA:   3'- aaCCCGaaaGCGGUGgUUCCG-----UGCGC- -5'
6524 5' -57.5 NC_001847.1 + 105880 0.74 0.325229
Target:  5'- -cGGGUg--CGCCGCCAGcgcguccGGCGCGCa -3'
miRNA:   3'- aaCCCGaaaGCGGUGGUU-------CCGUGCGc -5'
6524 5' -57.5 NC_001847.1 + 103798 0.83 0.099495
Target:  5'- -gGGGCUUcCGCCGCCGGcggcGGCACGCGc -3'
miRNA:   3'- aaCCCGAAaGCGGUGGUU----CCGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 65634 0.79 0.168244
Target:  5'- -aGGGCUUggcugCGCCGCCAAcGGC-CGCGu -3'
miRNA:   3'- aaCCCGAAa----GCGGUGGUU-CCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 45508 0.78 0.196021
Target:  5'- -gGGGCgggCGCCGCCGccGGGCgGCGCGg -3'
miRNA:   3'- aaCCCGaaaGCGGUGGU--UCCG-UGCGC- -5'
6524 5' -57.5 NC_001847.1 + 56798 0.77 0.22716
Target:  5'- -gGGGCUgUUCGCCGCCGcggcgcccaagccGGGCcCGCGg -3'
miRNA:   3'- aaCCCGA-AAGCGGUGGU-------------UCCGuGCGC- -5'
6524 5' -57.5 NC_001847.1 + 32997 0.76 0.270074
Target:  5'- -cGGGCcg-CGCCGCCGuGGuCGCGCGg -3'
miRNA:   3'- aaCCCGaaaGCGGUGGUuCC-GUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 133074 0.76 0.283287
Target:  5'- -gGGGCgcUCGCCGCCAccgcugcggcGGCGCGUGg -3'
miRNA:   3'- aaCCCGaaAGCGGUGGUu---------CCGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 4272 0.75 0.297006
Target:  5'- --cGGCUUUgGCgGCCAcgAGGCGCGCGc -3'
miRNA:   3'- aacCCGAAAgCGgUGGU--UCCGUGCGC- -5'
6524 5' -57.5 NC_001847.1 + 43532 0.75 0.311236
Target:  5'- -cGGGCUUccUCGCgGCCAAcacGGCGcCGCGg -3'
miRNA:   3'- aaCCCGAA--AGCGgUGGUU---CCGU-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.