miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6525 3' -64.9 NC_001847.1 + 78125 0.66 0.518265
Target:  5'- gGGCGCCAaaagcgggcgcgcgcCGGCCuGcGGCUCauacccaCCcGGCg -3'
miRNA:   3'- -CCGCGGU---------------GCCGG-C-CCGAGga-----GGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 67663 0.66 0.514565
Target:  5'- gGGCGCgGCGGCgCGGuGCggauaaUUGGCg -3'
miRNA:   3'- -CCGCGgUGCCG-GCC-CGaggag-GACCG- -5'
6525 3' -64.9 NC_001847.1 + 9725 0.66 0.514565
Target:  5'- cGGCcacucgcuuGCCACGcGaCCGGGCgggcCCUgCCccggGGCg -3'
miRNA:   3'- -CCG---------CGGUGC-C-GGCCCGa---GGA-GGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 3853 0.66 0.514565
Target:  5'- aGGCGUCAgCaG-CGGGC-CCUCCagcGGCg -3'
miRNA:   3'- -CCGCGGU-GcCgGCCCGaGGAGGa--CCG- -5'
6525 3' -64.9 NC_001847.1 + 63125 0.66 0.514565
Target:  5'- aGCGCCucguaaaaGCGGCUGuGGCaCCggaUCCcGGCg -3'
miRNA:   3'- cCGCGG--------UGCCGGC-CCGaGG---AGGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 29512 0.66 0.514565
Target:  5'- cGGCGCUuCGGCCGcagaGCUCgC-CCgcgcGGCg -3'
miRNA:   3'- -CCGCGGuGCCGGCc---CGAG-GaGGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 57001 0.66 0.514565
Target:  5'- gGGUaugaGCCGCaGGCCGGcGCgcgCCcgcUUUUGGCg -3'
miRNA:   3'- -CCG----CGGUG-CCGGCC-CGa--GG---AGGACCG- -5'
6525 3' -64.9 NC_001847.1 + 112538 0.66 0.514565
Target:  5'- cGGCcacucgcuuGCCACGcGaCCGGGCgggcCCUgCCccggGGCg -3'
miRNA:   3'- -CCG---------CGGUGC-C-GGCCCGa---GGA-GGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 54391 0.66 0.514565
Target:  5'- gGGCgGCCGCGGgcgaggCGGGCgccgCCgcgguuggCCUcGGCg -3'
miRNA:   3'- -CCG-CGGUGCCg-----GCCCGa---GGa-------GGA-CCG- -5'
6525 3' -64.9 NC_001847.1 + 134999 0.66 0.514565
Target:  5'- cGGCcCCcCGGCCGGGgC-CCgaggCCcgcgGGCg -3'
miRNA:   3'- -CCGcGGuGCCGGCCC-GaGGa---GGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 49394 0.66 0.514565
Target:  5'- cGGCGUugccguCAUGG-CGGGCUCCgcgcagCCUGccGCc -3'
miRNA:   3'- -CCGCG------GUGCCgGCCCGAGGa-----GGAC--CG- -5'
6525 3' -64.9 NC_001847.1 + 89633 0.66 0.514565
Target:  5'- cGCGCCGCccGGCgGcGGCgcccgCC-CCgGGCg -3'
miRNA:   3'- cCGCGGUG--CCGgC-CCGa----GGaGGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 42501 0.66 0.514565
Target:  5'- cGGCGCUguugaaggaaaACGGCCa-GCUCCUUgaGGa -3'
miRNA:   3'- -CCGCGG-----------UGCCGGccCGAGGAGgaCCg -5'
6525 3' -64.9 NC_001847.1 + 32186 0.66 0.514565
Target:  5'- cGGCcCCcCGGCCGGGgC-CCgaggCCcgcgGGCg -3'
miRNA:   3'- -CCGcGGuGCCGGCCC-GaGGa---GGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 56815 0.66 0.514565
Target:  5'- cGGCGCCcaaGCCGGGC-CCgc--GGCg -3'
miRNA:   3'- -CCGCGGugcCGGCCCGaGGaggaCCG- -5'
6525 3' -64.9 NC_001847.1 + 106666 0.66 0.514565
Target:  5'- aGGCGUCAgCaG-CGGGC-CCUCCagcGGCg -3'
miRNA:   3'- -CCGCGGU-GcCgGCCCGaGGAGGa--CCG- -5'
6525 3' -64.9 NC_001847.1 + 81324 0.66 0.514565
Target:  5'- aGCGCCcccgcuccgGCGcGCCaggGGGCgcagaCCUCCUcgcGGCg -3'
miRNA:   3'- cCGCGG---------UGC-CGG---CCCGa----GGAGGA---CCG- -5'
6525 3' -64.9 NC_001847.1 + 131707 0.66 0.514565
Target:  5'- gGGCGCUGCcGCaCGuGGCggCCUgCgUGGCa -3'
miRNA:   3'- -CCGCGGUGcCG-GC-CCGa-GGA-GgACCG- -5'
6525 3' -64.9 NC_001847.1 + 96491 0.66 0.513642
Target:  5'- gGGCgucGCCACGGCaacgcggCGGGCauggaCUUCCgUGGUc -3'
miRNA:   3'- -CCG---CGGUGCCG-------GCCCGa----GGAGG-ACCG- -5'
6525 3' -64.9 NC_001847.1 + 10642 0.66 0.511797
Target:  5'- cGGCuCCuc-GCCGGGCUCCUcgccauacccgucgCCggggGGCu -3'
miRNA:   3'- -CCGcGGugcCGGCCCGAGGA--------------GGa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.