miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6525 3' -64.9 NC_001847.1 + 6 0.67 0.460501
Target:  5'- cGCGCCGCGccGCgCGGGC-CC-CCUG-Cg -3'
miRNA:   3'- cCGCGGUGC--CG-GCCCGaGGaGGACcG- -5'
6525 3' -64.9 NC_001847.1 + 70 0.75 0.128256
Target:  5'- cGGCGCgGCGGgcccgggcccgcuCUGGGCUCCgccCCUGGg -3'
miRNA:   3'- -CCGCGgUGCC-------------GGCCCGAGGa--GGACCg -5'
6525 3' -64.9 NC_001847.1 + 122 0.66 0.499877
Target:  5'- cGCGCCcCGGCCccgcccgcgggccucGGGCcCCggCCggggGGCc -3'
miRNA:   3'- cCGCGGuGCCGG---------------CCCGaGGa-GGa---CCG- -5'
6525 3' -64.9 NC_001847.1 + 382 0.71 0.25568
Target:  5'- cGCGCCGCGcGCCGGaccgcGCUCCgaccgagaCCgagGGCc -3'
miRNA:   3'- cCGCGGUGC-CGGCC-----CGAGGa-------GGa--CCG- -5'
6525 3' -64.9 NC_001847.1 + 571 0.7 0.279691
Target:  5'- aGCGCCGCGucuccggcGCCGGGUccuggcCCUCCgcGGCc -3'
miRNA:   3'- cCGCGGUGC--------CGGCCCGa-----GGAGGa-CCG- -5'
6525 3' -64.9 NC_001847.1 + 898 0.71 0.238802
Target:  5'- gGGcCGCCGCGGCCGccGGCcgCCgcccgCC-GGCg -3'
miRNA:   3'- -CC-GCGGUGCCGGC--CCGa-GGa----GGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 965 0.69 0.340179
Target:  5'- uGCGCCGgcacccgggcCGGCgGGGCUUCcgCCgcGGCg -3'
miRNA:   3'- cCGCGGU----------GCCGgCCCGAGGa-GGa-CCG- -5'
6525 3' -64.9 NC_001847.1 + 1095 0.78 0.084209
Target:  5'- gGGCGCCGCGGCCgcGGGCggcgCCgCCgcGGCc -3'
miRNA:   3'- -CCGCGGUGCCGG--CCCGa---GGaGGa-CCG- -5'
6525 3' -64.9 NC_001847.1 + 1143 0.7 0.285967
Target:  5'- cGGCGCCuCGGCgCGcGGCUCCggCagcgcGGCc -3'
miRNA:   3'- -CCGCGGuGCCG-GC-CCGAGGa-Gga---CCG- -5'
6525 3' -64.9 NC_001847.1 + 1184 0.74 0.167934
Target:  5'- aGGCcaccGCCGCGGCCGGcaGCUCgUCg-GGCg -3'
miRNA:   3'- -CCG----CGGUGCCGGCC--CGAGgAGgaCCG- -5'
6525 3' -64.9 NC_001847.1 + 1409 0.67 0.457002
Target:  5'- cGCGCgGCGGCaCGGGCaCCgcggugcgcgggcCCaGGCg -3'
miRNA:   3'- cCGCGgUGCCG-GCCCGaGGa------------GGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 1657 0.68 0.401457
Target:  5'- uGCGCCugcccgACGGCCGGGC-CgUCgCgcGGCc -3'
miRNA:   3'- cCGCGG------UGCCGGCCCGaGgAG-Ga-CCG- -5'
6525 3' -64.9 NC_001847.1 + 1930 0.73 0.193701
Target:  5'- cGGCGCgGCGGCCacucGGGCcgccggcgcucgUCCUCgCcgGGCg -3'
miRNA:   3'- -CCGCGgUGCCGG----CCCG------------AGGAG-Ga-CCG- -5'
6525 3' -64.9 NC_001847.1 + 1940 0.71 0.26152
Target:  5'- cGGCG-CGCGGCgCaGaGCUCCUCCagcgagGGCa -3'
miRNA:   3'- -CCGCgGUGCCG-GcC-CGAGGAGGa-----CCG- -5'
6525 3' -64.9 NC_001847.1 + 2229 0.72 0.230187
Target:  5'- aGCGCCGCGGCgcUGGGCgcgggcgugugguagUCC-CCgGGCg -3'
miRNA:   3'- cCGCGGUGCCG--GCCCG---------------AGGaGGaCCG- -5'
6525 3' -64.9 NC_001847.1 + 2394 0.66 0.487179
Target:  5'- cGGCGCCuCGGCCcagaGUcgUCCUCCcccgaggGGCc -3'
miRNA:   3'- -CCGCGGuGCCGGcc--CG--AGGAGGa------CCG- -5'
6525 3' -64.9 NC_001847.1 + 2543 0.67 0.457875
Target:  5'- cGGCGCUcccGCcGCCGGGCcggggcggcccucuUCCUCCUc-- -3'
miRNA:   3'- -CCGCGG---UGcCGGCCCG--------------AGGAGGAccg -5'
6525 3' -64.9 NC_001847.1 + 2657 0.68 0.4047
Target:  5'- cGGCGCCuucgcccggcggcuCGGCCGgcaucGGCUCgUCCUccGCg -3'
miRNA:   3'- -CCGCGGu-------------GCCGGC-----CCGAGgAGGAc-CG- -5'
6525 3' -64.9 NC_001847.1 + 2776 0.68 0.369951
Target:  5'- cGGCGCCcCcGCC-GGCggCCUCCagGGCc -3'
miRNA:   3'- -CCGCGGuGcCGGcCCGa-GGAGGa-CCG- -5'
6525 3' -64.9 NC_001847.1 + 2804 0.67 0.443152
Target:  5'- cGCGagCGCGGCCGccagccgcgccGGCaCCUCCgccGGCg -3'
miRNA:   3'- cCGCg-GUGCCGGC-----------CCGaGGAGGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.