miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6525 5' -51.8 NC_001847.1 + 75639 0.66 0.986622
Target:  5'- ---aCGGCGAugccGGAgCCGGagGCGCGGg -3'
miRNA:   3'- cguaGUCGCU----UUUgGGCUagCGCGUC- -5'
6525 5' -51.8 NC_001847.1 + 125113 0.66 0.986622
Target:  5'- cGCggCGGCGAGaAGCCCGGagcccUCGCaCAc -3'
miRNA:   3'- -CGuaGUCGCUU-UUGGGCU-----AGCGcGUc -5'
6525 5' -51.8 NC_001847.1 + 65522 0.66 0.986622
Target:  5'- cGCAgu-GCGGccGCCCGGcCGCGCc- -3'
miRNA:   3'- -CGUaguCGCUuuUGGGCUaGCGCGuc -5'
6525 5' -51.8 NC_001847.1 + 28681 0.66 0.986622
Target:  5'- aGCAguacgCGGCGcugguGGACCUGGUguaCGCGCGc -3'
miRNA:   3'- -CGUa----GUCGCu----UUUGGGCUA---GCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 52227 0.66 0.986622
Target:  5'- ---aCAGCGAGAAaaagccCCCGGgcgcCGCGCGc -3'
miRNA:   3'- cguaGUCGCUUUU------GGGCUa---GCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 54892 0.66 0.986622
Target:  5'- gGCAcCGGCGAGGcgcacguuuCCCGGgagcUCGCGgGGg -3'
miRNA:   3'- -CGUaGUCGCUUUu--------GGGCU----AGCGCgUC- -5'
6525 5' -51.8 NC_001847.1 + 17482 0.66 0.986622
Target:  5'- cGCAguacUAGCGAcguCCCGuagagCGCGUAGu -3'
miRNA:   3'- -CGUa---GUCGCUuuuGGGCua---GCGCGUC- -5'
6525 5' -51.8 NC_001847.1 + 76604 0.66 0.986622
Target:  5'- gGCggCGGCGAAGACCgCGGcggccucuUCGUGUc- -3'
miRNA:   3'- -CGuaGUCGCUUUUGG-GCU--------AGCGCGuc -5'
6525 5' -51.8 NC_001847.1 + 59704 0.66 0.986622
Target:  5'- ---gCAGCGGGAACaCCGcgcUCGCcuGCAGg -3'
miRNA:   3'- cguaGUCGCUUUUG-GGCu--AGCG--CGUC- -5'
6525 5' -51.8 NC_001847.1 + 74166 0.66 0.986622
Target:  5'- gGCGccucUCGGCGuGGGGCCCaugcCGCGCGGc -3'
miRNA:   3'- -CGU----AGUCGC-UUUUGGGcua-GCGCGUC- -5'
6525 5' -51.8 NC_001847.1 + 131494 0.66 0.986622
Target:  5'- aGCAguacgCGGCGcugguGGACCUGGUguaCGCGCGc -3'
miRNA:   3'- -CGUa----GUCGCu----UUUGGGCUA---GCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 95863 0.66 0.986622
Target:  5'- aCGUCAGCGAGuuCgUGGagGCGCuGg -3'
miRNA:   3'- cGUAGUCGCUUuuGgGCUagCGCGuC- -5'
6525 5' -51.8 NC_001847.1 + 15866 0.66 0.986622
Target:  5'- cGCGUCGGUacuGGCCCucgacGAgcCGCGCGGg -3'
miRNA:   3'- -CGUAGUCGcuuUUGGG-----CUa-GCGCGUC- -5'
6525 5' -51.8 NC_001847.1 + 74796 0.66 0.986455
Target:  5'- gGCAUgGGCGAcgaaggaGAGCUCGuccucaCGCGCGa -3'
miRNA:   3'- -CGUAgUCGCU-------UUUGGGCua----GCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 25051 0.66 0.984881
Target:  5'- uGCAgUCGcGCGAGAccGCCCGGUCGaaGCu- -3'
miRNA:   3'- -CGU-AGU-CGCUUU--UGGGCUAGCg-CGuc -5'
6525 5' -51.8 NC_001847.1 + 927 0.66 0.984881
Target:  5'- ---cCGGCGccggGAAGCCCGAgccCGCGCc- -3'
miRNA:   3'- cguaGUCGC----UUUUGGGCUa--GCGCGuc -5'
6525 5' -51.8 NC_001847.1 + 95317 0.66 0.984881
Target:  5'- gGCG-CGGCGccggcAGGgCCGAagGCGCAGg -3'
miRNA:   3'- -CGUaGUCGCu----UUUgGGCUagCGCGUC- -5'
6525 5' -51.8 NC_001847.1 + 29473 0.66 0.984881
Target:  5'- cGCGUCGGCcuGGGCgCUGG-CGCGCGc -3'
miRNA:   3'- -CGUAGUCGcuUUUG-GGCUaGCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 55941 0.66 0.984881
Target:  5'- gGCGUC-GCGA--GCCCaGAaUGCGCAc -3'
miRNA:   3'- -CGUAGuCGCUuuUGGG-CUaGCGCGUc -5'
6525 5' -51.8 NC_001847.1 + 132286 0.66 0.984881
Target:  5'- cGCGUCGGCcuGGGCgCUGG-CGCGCGc -3'
miRNA:   3'- -CGUAGUCGcuUUUG-GGCUaGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.