miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6526 3' -61.3 NC_001847.1 + 45510 0.66 0.662931
Target:  5'- --gGCGGGCgccgccgcCGGGCGgCgCGGACGGg -3'
miRNA:   3'- cgaCGCCUGa-------GCCCGCgG-GUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 22516 0.66 0.662931
Target:  5'- gGCgGCGGGC-CGGGCcggucuGCCgGGACa-- -3'
miRNA:   3'- -CGaCGCCUGaGCCCG------CGGgUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 66524 0.66 0.662931
Target:  5'- aGCUGCGcGGCUgGGG-GCgCAG-CGAc -3'
miRNA:   3'- -CGACGC-CUGAgCCCgCGgGUCuGCUa -5'
6526 3' -61.3 NC_001847.1 + 109544 0.66 0.662931
Target:  5'- cGCgUGCGuGCUCGGagcGUGCCUcuGGACGAc -3'
miRNA:   3'- -CG-ACGCcUGAGCC---CGCGGG--UCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 32985 0.66 0.662931
Target:  5'- cGCcgggGCGGGCa-GGGCGgCCGGAgCGGc -3'
miRNA:   3'- -CGa---CGCCUGagCCCGCgGGUCU-GCUa -5'
6526 3' -61.3 NC_001847.1 + 125329 0.66 0.662931
Target:  5'- gGCgGCGGGC-CGGGCcggucuGCCgGGACa-- -3'
miRNA:   3'- -CGaCGCCUGaGCCCG------CGGgUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 74135 0.66 0.662931
Target:  5'- uGCUGCG----CGuGGCGCCgGGGCGAa -3'
miRNA:   3'- -CGACGCcugaGC-CCGCGGgUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 78267 0.66 0.652966
Target:  5'- cGCcgGCGGGCccgUUGGccGCGCCCGGGCc-- -3'
miRNA:   3'- -CGa-CGCCUG---AGCC--CGCGGGUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 125483 0.66 0.652966
Target:  5'- cGCgGCGGGCgCGaGGaCGCCCGGcugcuCGAg -3'
miRNA:   3'- -CGaCGCCUGaGC-CC-GCGGGUCu----GCUa -5'
6526 3' -61.3 NC_001847.1 + 107829 0.66 0.652966
Target:  5'- gGCgGCGGcgcggaggggaaGCUCGGGCGaCCGGcgGCGGc -3'
miRNA:   3'- -CGaCGCC------------UGAGCCCGCgGGUC--UGCUa -5'
6526 3' -61.3 NC_001847.1 + 116402 0.66 0.652966
Target:  5'- gGCgGCGGcGCUCuGGGC-CCCGGGCc-- -3'
miRNA:   3'- -CGaCGCC-UGAG-CCCGcGGGUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 82318 0.66 0.652966
Target:  5'- -aUGCGGGCg-GGGuCGCCgGcGACGAg -3'
miRNA:   3'- cgACGCCUGagCCC-GCGGgU-CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 117269 0.66 0.652966
Target:  5'- uCUGCGGGgccgccguuUUgGGGCGCCCcgcgcccGACGAc -3'
miRNA:   3'- cGACGCCU---------GAgCCCGCGGGu------CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 5016 0.66 0.652966
Target:  5'- gGCgGCGGcgcggaggggaaGCUCGGGCGaCCGGcgGCGGc -3'
miRNA:   3'- -CGaCGCC------------UGAGCCCGCgGGUC--UGCUa -5'
6526 3' -61.3 NC_001847.1 + 32177 0.66 0.652966
Target:  5'- cGCgGCGGAgCUUGGcGCGCgCGcGGCGGa -3'
miRNA:   3'- -CGaCGCCU-GAGCC-CGCGgGU-CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 114802 0.66 0.642985
Target:  5'- --cGCGGuUggGGGUGCCCuGGCGGUa -3'
miRNA:   3'- cgaCGCCuGagCCCGCGGGuCUGCUA- -5'
6526 3' -61.3 NC_001847.1 + 115275 0.66 0.642985
Target:  5'- gGCggugGCGGGCUaagccGGCGCCCccGGGCGc- -3'
miRNA:   3'- -CGa---CGCCUGAgc---CCGCGGG--UCUGCua -5'
6526 3' -61.3 NC_001847.1 + 96477 0.66 0.642985
Target:  5'- gGCuUGCGGGCggCGGGCGUcgCCAcGGCa-- -3'
miRNA:   3'- -CG-ACGCCUGa-GCCCGCG--GGU-CUGcua -5'
6526 3' -61.3 NC_001847.1 + 72769 0.66 0.642985
Target:  5'- cGC-GuCGGGCggcgCGGcGUGCCUGGGCGAa -3'
miRNA:   3'- -CGaC-GCCUGa---GCC-CGCGGGUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 36966 0.66 0.642985
Target:  5'- gGCUGCcuagaGGACU-GGGCGCgCCGcGGCGu- -3'
miRNA:   3'- -CGACG-----CCUGAgCCCGCG-GGU-CUGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.