miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6526 3' -61.3 NC_001847.1 + 133822 0.66 0.640987
Target:  5'- cGCUG-GGGCUCGGGgaGCCggacuucguggaGGGCGAg -3'
miRNA:   3'- -CGACgCCUGAGCCCg-CGGg-----------UCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 33502 0.66 0.612026
Target:  5'- gGCggcGCGGGCggcggCGGGCGCCgccgcggaggcgcCGGGCGc- -3'
miRNA:   3'- -CGa--CGCCUGa----GCCCGCGG-------------GUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 117269 0.66 0.652966
Target:  5'- uCUGCGGGgccgccguuUUgGGGCGCCCcgcgcccGACGAc -3'
miRNA:   3'- cGACGCCU---------GAgCCCGCGGGu------CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 2559 0.66 0.632996
Target:  5'- --gGCGGGCUgucuucggcgCGGGCGCCUgcGCGGc -3'
miRNA:   3'- cgaCGCCUGA----------GCCCGCGGGucUGCUa -5'
6526 3' -61.3 NC_001847.1 + 78410 0.66 0.632996
Target:  5'- cGCUGCGGGCgcgcugCuGGCGCgCGcgcuGACGGa -3'
miRNA:   3'- -CGACGCCUGa-----GcCCGCGgGU----CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 6324 0.66 0.623006
Target:  5'- cGC-GCGGccACguacgCGGGUGCCCcGGCGGc -3'
miRNA:   3'- -CGaCGCC--UGa----GCCCGCGGGuCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 109544 0.66 0.662931
Target:  5'- cGCgUGCGuGCUCGGagcGUGCCUcuGGACGAc -3'
miRNA:   3'- -CG-ACGCcUGAGCC---CGCGGG--UCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 83265 0.66 0.632996
Target:  5'- cGCgGCGGGggCGGGCGCagAGGCGc- -3'
miRNA:   3'- -CGaCGCCUgaGCCCGCGggUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 87620 0.66 0.632996
Target:  5'- --gGCGG-CUUuGGCGCCCGGGCu-- -3'
miRNA:   3'- cgaCGCCuGAGcCCGCGGGUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 86519 0.66 0.613023
Target:  5'- cGCgGCGG-CU-GGGCGCCCGcgugcuGGCGGc -3'
miRNA:   3'- -CGaCGCCuGAgCCCGCGGGU------CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 66331 0.66 0.632996
Target:  5'- cCUGCGGcgggugggGCgCGGGCGCCgCcguGGCGAUc -3'
miRNA:   3'- cGACGCC--------UGaGCCCGCGG-Gu--CUGCUA- -5'
6526 3' -61.3 NC_001847.1 + 19186 0.66 0.623006
Target:  5'- aGCacgGCGGGggCGGGgucugugGCCCAGACGGc -3'
miRNA:   3'- -CGa--CGCCUgaGCCCg------CGGGUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 50857 0.66 0.623006
Target:  5'- --aGCGcGCUUcGGCGCCCGGGCGc- -3'
miRNA:   3'- cgaCGCcUGAGcCCGCGGGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 29993 0.66 0.623006
Target:  5'- gGCUGCaGGGCUauGuCGCCgAGACGGa -3'
miRNA:   3'- -CGACG-CCUGAgcCcGCGGgUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 106786 0.66 0.613023
Target:  5'- cGCga-GGGCgcCGGGgGCCCGGGCGc- -3'
miRNA:   3'- -CGacgCCUGa-GCCCgCGGGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 133302 0.66 0.613023
Target:  5'- cGCcuggGcCGGGCgcuggaCGGGCGCgCCGGACGu- -3'
miRNA:   3'- -CGa---C-GCCUGa-----GCCCGCG-GGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 114802 0.66 0.642985
Target:  5'- --cGCGGuUggGGGUGCCCuGGCGGUa -3'
miRNA:   3'- cgaCGCCuGagCCCGCGGGuCUGCUA- -5'
6526 3' -61.3 NC_001847.1 + 115275 0.66 0.642985
Target:  5'- gGCggugGCGGGCUaagccGGCGCCCccGGGCGc- -3'
miRNA:   3'- -CGa---CGCCUGAgc---CCGCGGG--UCUGCua -5'
6526 3' -61.3 NC_001847.1 + 87667 0.66 0.623006
Target:  5'- gGCUGCGccgcauGGCcCGGGCGCUgGGGCu-- -3'
miRNA:   3'- -CGACGC------CUGaGCCCGCGGgUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 1211 0.66 0.623006
Target:  5'- cGCU-CGGugUucuuuuagcgcgCGGGCGCCCGuGugGGa -3'
miRNA:   3'- -CGAcGCCugA------------GCCCGCGGGU-CugCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.