miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6526 3' -61.3 NC_001847.1 + 96477 0.66 0.642985
Target:  5'- gGCuUGCGGGCggCGGGCGUcgCCAcGGCa-- -3'
miRNA:   3'- -CG-ACGCCUGa-GCCCGCG--GGU-CUGcua -5'
6526 3' -61.3 NC_001847.1 + 69426 0.66 0.641986
Target:  5'- cGCcccgGCGGGCUCuGGgaugaacGCGUCCGGGCGu- -3'
miRNA:   3'- -CGa---CGCCUGAG-CC-------CGCGGGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 31009 0.66 0.640987
Target:  5'- cGCUG-GGGCUCGGGgaGCCggacuucguggaGGGCGAg -3'
miRNA:   3'- -CGACgCCUGAGCCCg-CGGg-----------UCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 133822 0.66 0.640987
Target:  5'- cGCUG-GGGCUCGGGgaGCCggacuucguggaGGGCGAg -3'
miRNA:   3'- -CGACgCCUGAGCCCg-CGGg-----------UCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 83265 0.66 0.632996
Target:  5'- cGCgGCGGGggCGGGCGCagAGGCGc- -3'
miRNA:   3'- -CGaCGCCUgaGCCCGCGggUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 66331 0.66 0.632996
Target:  5'- cCUGCGGcgggugggGCgCGGGCGCCgCcguGGCGAUc -3'
miRNA:   3'- cGACGCC--------UGaGCCCGCGG-Gu--CUGCUA- -5'
6526 3' -61.3 NC_001847.1 + 2559 0.66 0.632996
Target:  5'- --gGCGGGCUgucuucggcgCGGGCGCCUgcGCGGc -3'
miRNA:   3'- cgaCGCCUGA----------GCCCGCGGGucUGCUa -5'
6526 3' -61.3 NC_001847.1 + 78410 0.66 0.632996
Target:  5'- cGCUGCGGGCgcgcugCuGGCGCgCGcgcuGACGGa -3'
miRNA:   3'- -CGACGCCUGa-----GcCCGCGgGU----CUGCUa -5'
6526 3' -61.3 NC_001847.1 + 87620 0.66 0.632996
Target:  5'- --gGCGG-CUUuGGCGCCCGGGCu-- -3'
miRNA:   3'- cgaCGCCuGAGcCCGCGGGUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 133574 0.66 0.632996
Target:  5'- uGUUGgGGACacaggcgCGGGCGCgcuaUCGGGCGGg -3'
miRNA:   3'- -CGACgCCUGa------GCCCGCG----GGUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 33428 0.66 0.632996
Target:  5'- aCU-CGGACUCGGaGgGCUCGGAgGAc -3'
miRNA:   3'- cGAcGCCUGAGCC-CgCGGGUCUgCUa -5'
6526 3' -61.3 NC_001847.1 + 103006 0.66 0.632996
Target:  5'- uGC-GCGGGCgCGgcGGCGCCCAGcgccgGCGGc -3'
miRNA:   3'- -CGaCGCCUGaGC--CCGCGGGUC-----UGCUa -5'
6526 3' -61.3 NC_001847.1 + 6324 0.66 0.623006
Target:  5'- cGC-GCGGccACguacgCGGGUGCCCcGGCGGc -3'
miRNA:   3'- -CGaCGCC--UGa----GCCCGCGGGuCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 120929 0.66 0.623006
Target:  5'- --gGCGGGg-CGGGCGCgCGGGCGu- -3'
miRNA:   3'- cgaCGCCUgaGCCCGCGgGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 73138 0.66 0.623006
Target:  5'- uGCUcGCGGACcUGgaggaggcGGCGCgCCGGGCGGa -3'
miRNA:   3'- -CGA-CGCCUGaGC--------CCGCG-GGUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 100855 0.66 0.623006
Target:  5'- cGCUGaCGGccGCgagCGcGGCGCCCAGcCGc- -3'
miRNA:   3'- -CGAC-GCC--UGa--GC-CCGCGGGUCuGCua -5'
6526 3' -61.3 NC_001847.1 + 29993 0.66 0.623006
Target:  5'- gGCUGCaGGGCUauGuCGCCgAGACGGa -3'
miRNA:   3'- -CGACG-CCUGAgcCcGCGGgUCUGCUa -5'
6526 3' -61.3 NC_001847.1 + 50857 0.66 0.623006
Target:  5'- --aGCGcGCUUcGGCGCCCGGGCGc- -3'
miRNA:   3'- cgaCGCcUGAGcCCGCGGGUCUGCua -5'
6526 3' -61.3 NC_001847.1 + 87667 0.66 0.623006
Target:  5'- gGCUGCGccgcauGGCcCGGGCGCUgGGGCu-- -3'
miRNA:   3'- -CGACGC------CUGaGCCCGCGGgUCUGcua -5'
6526 3' -61.3 NC_001847.1 + 1211 0.66 0.623006
Target:  5'- cGCU-CGGugUucuuuuagcgcgCGGGCGCCCGuGugGGa -3'
miRNA:   3'- -CGAcGCCugA------------GCCCGCGGGU-CugCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.