miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6526 5' -57.3 NC_001847.1 + 103748 0.66 0.868534
Target:  5'- gGGAagCCCGAGcccgcGCCCGGGgaCGACu -3'
miRNA:   3'- -UCUagGGGCUCau---CGGGCUCa-GCUGc -5'
6526 5' -57.3 NC_001847.1 + 53755 0.66 0.868534
Target:  5'- cGGAUCC---GGcGGCCCGAGgCGGCGa -3'
miRNA:   3'- -UCUAGGggcUCaUCGGGCUCaGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 38863 0.66 0.868534
Target:  5'- cGG-CCCCGAGUacGGCCCcGGUucCGGCc -3'
miRNA:   3'- uCUaGGGGCUCA--UCGGGcUCA--GCUGc -5'
6526 5' -57.3 NC_001847.1 + 22381 0.66 0.868534
Target:  5'- gAGGcCCCCGcGgGGCCgGGGUcgCGACGg -3'
miRNA:   3'- -UCUaGGGGCuCaUCGGgCUCA--GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 935 0.66 0.868534
Target:  5'- gGGAagCCCGAGcccgcGCCCGGGgaCGACu -3'
miRNA:   3'- -UCUagGGGCUCau---CGGGCUCa-GCUGc -5'
6526 5' -57.3 NC_001847.1 + 32777 0.66 0.861096
Target:  5'- gAGAUCCCUGuGgggggagGGCCgGGGgcgGACGg -3'
miRNA:   3'- -UCUAGGGGCuCa------UCGGgCUCag-CUGC- -5'
6526 5' -57.3 NC_001847.1 + 120079 0.66 0.861096
Target:  5'- cGAUCCCCGGGccGCC--GGUCaGAUGg -3'
miRNA:   3'- uCUAGGGGCUCauCGGgcUCAG-CUGC- -5'
6526 5' -57.3 NC_001847.1 + 15933 0.66 0.861096
Target:  5'- ---gCCCCGcGGUGGCCgCGGcGcCGACGa -3'
miRNA:   3'- ucuaGGGGC-UCAUCGG-GCU-CaGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 105232 0.66 0.853457
Target:  5'- ---cCCCCGAGgGGCCCcccgCGGCGg -3'
miRNA:   3'- ucuaGGGGCUCaUCGGGcucaGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 129638 0.66 0.853457
Target:  5'- uAGA-CCCCGAcgaaGUGGCggUCGAGguugCGGCGg -3'
miRNA:   3'- -UCUaGGGGCU----CAUCG--GGCUCa---GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 2419 0.66 0.853457
Target:  5'- ---cCCCCGAGgGGCCCcccgCGGCGg -3'
miRNA:   3'- ucuaGGGGCUCaUCGGGcucaGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 76416 0.66 0.853457
Target:  5'- cGggCCgCCgGAGgAGCCCGGGguggccgCGACGg -3'
miRNA:   3'- uCuaGG-GG-CUCaUCGGGCUCa------GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 74106 0.66 0.853457
Target:  5'- uGGUgCCCGGGgcggccgcGCCCGGGgaugUGACGc -3'
miRNA:   3'- uCUAgGGGCUCau------CGGGCUCa---GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 125190 0.66 0.845622
Target:  5'- -aGUCCUCGGGgcagaaggcGCCCGGGccgCGGCGa -3'
miRNA:   3'- ucUAGGGGCUCau-------CGGGCUCa--GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 88924 0.66 0.845622
Target:  5'- gAGAuuUCCCCGcGgccGGCCCG-G-CGGCGg -3'
miRNA:   3'- -UCU--AGGGGCuCa--UCGGGCuCaGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 22377 0.66 0.845622
Target:  5'- -aGUCCUCGGGgcagaaggcGCCCGGGccgCGGCGa -3'
miRNA:   3'- ucUAGGGGCUCau-------CGGGCUCa--GCUGC- -5'
6526 5' -57.3 NC_001847.1 + 59439 0.66 0.845622
Target:  5'- cGG-CCCgCGGcccGUGGCCCGAG-CGGCu -3'
miRNA:   3'- uCUaGGG-GCU---CAUCGGGCUCaGCUGc -5'
6526 5' -57.3 NC_001847.1 + 54912 0.66 0.837597
Target:  5'- ----aCCCGGcaacGUGGCCCGcGUUGACGc -3'
miRNA:   3'- ucuagGGGCU----CAUCGGGCuCAGCUGC- -5'
6526 5' -57.3 NC_001847.1 + 90852 0.66 0.837597
Target:  5'- cGGcgCCCCGGGgccggGGCUgGuGUCGAgGc -3'
miRNA:   3'- -UCuaGGGGCUCa----UCGGgCuCAGCUgC- -5'
6526 5' -57.3 NC_001847.1 + 70374 0.66 0.837597
Target:  5'- aAGGccgCCCCGAagAGcCCCGGGUgCGACu -3'
miRNA:   3'- -UCUa--GGGGCUcaUC-GGGCUCA-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.