miRNA display CGI


Results 21 - 40 of 345 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 96635 0.66 0.866841
Target:  5'- gGGGCCGGCGgguaCGCGUCgUGCGcggggGCCGGc -3'
miRNA:   3'- aCCUGGCUGC----GUGCGG-AUGU-----UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 75274 0.66 0.866841
Target:  5'- gGaGGCCGcGCGCGCgGCCcucgGCGACCGc- -3'
miRNA:   3'- aC-CUGGC-UGCGUG-CGGa---UGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 130528 0.66 0.866841
Target:  5'- cGGGCCGcC-CGCGCCgaGCuGGCCGAGc -3'
miRNA:   3'- aCCUGGCuGcGUGCGGa-UG-UUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 61995 0.66 0.866841
Target:  5'- aUGGGCCcgaagagcGGCGCGgGgcCCUGCGGCCGu- -3'
miRNA:   3'- -ACCUGG--------CUGCGUgC--GGAUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 68060 0.66 0.866841
Target:  5'- cGGcCUcGCgGCGCGCCUGCGGCgGGg -3'
miRNA:   3'- aCCuGGcUG-CGUGCGGAUGUUGgCUu -5'
6527 3' -56.5 NC_001847.1 + 104384 0.66 0.866841
Target:  5'- aGGccaGCaCGGCGCGCGCCaGCGcGCCGc- -3'
miRNA:   3'- aCC---UG-GCUGCGUGCGGaUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 123471 0.66 0.866841
Target:  5'- aUGaGGCCGAUGCAgCGCCcccuucaccGCcGCCGGAa -3'
miRNA:   3'- -AC-CUGGCUGCGU-GCGGa--------UGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 38546 0.66 0.866841
Target:  5'- aGGAaaacCCG-CGUuacuggcaGCGCCUGCuGCCGGAg -3'
miRNA:   3'- aCCU----GGCuGCG--------UGCGGAUGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 33589 0.66 0.866841
Target:  5'- cGGuGCCGACG-ACGuCCUGCGccaGCUGGAc -3'
miRNA:   3'- aCC-UGGCUGCgUGC-GGAUGU---UGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 34186 0.66 0.866841
Target:  5'- cGGGCCGggggcGCGCACGUCc-CGcCCGAGu -3'
miRNA:   3'- aCCUGGC-----UGCGUGCGGauGUuGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 121756 0.66 0.866086
Target:  5'- cGGGCCcgcggcgcgcccgGACGUgcGCGCCguucGCGGCUGGAg -3'
miRNA:   3'- aCCUGG-------------CUGCG--UGCGGa---UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 131429 0.66 0.85919
Target:  5'- cGuGGCCGGCGCGCGCg-AUuGCCGc- -3'
miRNA:   3'- aC-CUGGCUGCGUGCGgaUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 2799 0.66 0.85919
Target:  5'- aGGGCCGcgaGCGCgGCCgcCAGCCGc- -3'
miRNA:   3'- aCCUGGCug-CGUG-CGGauGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 19263 0.66 0.85919
Target:  5'- cGGACCGGuuCugGCCgGCGGCgCGAc -3'
miRNA:   3'- aCCUGGCUgcGugCGGaUGUUG-GCUu -5'
6527 3' -56.5 NC_001847.1 + 47701 0.66 0.85919
Target:  5'- gGGGCCGuugaGCGCGCGCa-GCAGCUc-- -3'
miRNA:   3'- aCCUGGC----UGCGUGCGgaUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 28348 0.66 0.85919
Target:  5'- gGGGCCGcGCGCccgggcccccgGCGCCcucGCcGCCGGAg -3'
miRNA:   3'- aCCUGGC-UGCG-----------UGCGGa--UGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 58018 0.66 0.85919
Target:  5'- cGG-UCGcGCGCGCGCCUugaaGCAGCCc-- -3'
miRNA:   3'- aCCuGGC-UGCGUGCGGA----UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 127316 0.66 0.85919
Target:  5'- cGGAgacaCGGCGaccgGCGCCgagGCGGCCGGc -3'
miRNA:   3'- aCCUg---GCUGCg---UGCGGa--UGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 30687 0.66 0.85919
Target:  5'- cGGGCaGGCGCACGuguaCCUGCGcGCCGc- -3'
miRNA:   3'- aCCUGgCUGCGUGC----GGAUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 105612 0.66 0.85919
Target:  5'- aGGGCCGcgaGCGCgGCCgcCAGCCGc- -3'
miRNA:   3'- aCCUGGCug-CGUG-CGGauGUUGGCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.