miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 66685 0.66 0.61787
Target:  5'- gGCGGGGCCccggccgcgggCGCGgacCUCuGcGGCCGCu -3'
miRNA:   3'- aCGCUCCGGca---------GCGC---GAG-CaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 16788 0.66 0.610022
Target:  5'- gGCGAGG-CGUCGUa--CGUGGCgGUc -3'
miRNA:   3'- aCGCUCCgGCAGCGcgaGCACCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 97003 0.66 0.610022
Target:  5'- aGCG-GGUCGgcgGCGC---UGGCCGCg -3'
miRNA:   3'- aCGCuCCGGCag-CGCGagcACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 32137 0.66 0.610022
Target:  5'- cGCuGGGcGCCGcCGCGCccgCGcacGCCGCg -3'
miRNA:   3'- aCG-CUC-CGGCaGCGCGa--GCac-CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 100764 0.66 0.610022
Target:  5'- gGCGGcGGCCGcCGuUGUUUc-GGCCGCa -3'
miRNA:   3'- aCGCU-CCGGCaGC-GCGAGcaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 57775 0.66 0.610022
Target:  5'- aGCGGGcGCCGgcgccaCGCGUcgcacggCGUGucGCCGCc -3'
miRNA:   3'- aCGCUC-CGGCa-----GCGCGa------GCAC--CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 29482 0.66 0.610022
Target:  5'- gGcCGAGGCgG-CaCGCUCuccGGCCGCg -3'
miRNA:   3'- aC-GCUCCGgCaGcGCGAGca-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 132104 0.66 0.610022
Target:  5'- cGCGugcuccGGGCCGcCGagcuGCUCGgcgcGGcCCGCg -3'
miRNA:   3'- aCGC------UCCGGCaGCg---CGAGCa---CC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 52568 0.66 0.610022
Target:  5'- cUGCGAGaGCUGga--GCUCGaGGCgGCg -3'
miRNA:   3'- -ACGCUC-CGGCagcgCGAGCaCCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 69486 0.66 0.610022
Target:  5'- cGCGAuGGUgCGggCGCGCaCGcGGCCGUu -3'
miRNA:   3'- aCGCU-CCG-GCa-GCGCGaGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 113490 0.66 0.610022
Target:  5'- cGgGGGGCUcgcccuccgGUCGCGCccgggCGcGGcCCGCg -3'
miRNA:   3'- aCgCUCCGG---------CAGCGCGa----GCaCC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 84956 0.66 0.610022
Target:  5'- cGCGAcGUccucgucgaacaCGcUCGUGCUCaUGGCCGCc -3'
miRNA:   3'- aCGCUcCG------------GC-AGCGCGAGcACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 122569 0.66 0.610022
Target:  5'- gUGCGAGGgCGcCGCGUaCGcGG-CGCc -3'
miRNA:   3'- -ACGCUCCgGCaGCGCGaGCaCCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 10677 0.66 0.610022
Target:  5'- cGgGGGGCUcgcccuccgGUCGCGCccgggCGcGGcCCGCg -3'
miRNA:   3'- aCgCUCCGG---------CAGCGCGa----GCaCC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 29291 0.66 0.610022
Target:  5'- cGCGugcuccGGGCCGcCGagcuGCUCGgcgcGGcCCGCg -3'
miRNA:   3'- aCGC------UCCGGCaGCg---CGAGCa---CC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 120747 0.66 0.610022
Target:  5'- aGCGGGGCC-UCGCGCcagcUCGgcgaGCCu- -3'
miRNA:   3'- aCGCUCCGGcAGCGCG----AGCac--CGGcg -5'
6527 5' -62.7 NC_001847.1 + 52950 0.66 0.610022
Target:  5'- -cCGAGGCCG-CgGCGuCUU-UGGCCGUg -3'
miRNA:   3'- acGCUCCGGCaG-CGC-GAGcACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 89166 0.66 0.610022
Target:  5'- cUGCGucgucGCCGaCGCGCgCGccuuuucgccgaUGGCCGCc -3'
miRNA:   3'- -ACGCuc---CGGCaGCGCGaGC------------ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 122381 0.66 0.610022
Target:  5'- cUGCGGacGGCCGgcgacugCGCGCUCau--CCGCa -3'
miRNA:   3'- -ACGCU--CCGGCa------GCGCGAGcaccGGCG- -5'
6527 5' -62.7 NC_001847.1 + 43498 0.66 0.610022
Target:  5'- cGCGccGCCGUCGauCGCUacugGGCgGCg -3'
miRNA:   3'- aCGCucCGGCAGC--GCGAgca-CCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.