miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6528 3' -57.8 NC_001847.1 + 29499 0.66 0.762721
Target:  5'- -cUCcGGCcgCGGGCgGCgCUUCGGCCGc -3'
miRNA:   3'- guAGaCCGa-GUCCG-CG-GAAGUCGGUu -5'
6528 3' -57.8 NC_001847.1 + 101093 0.66 0.762721
Target:  5'- gGUCggcggGGCgggCGGGCGCgUUC-GCCGu -3'
miRNA:   3'- gUAGa----CCGa--GUCCGCGgAAGuCGGUu -5'
6528 3' -57.8 NC_001847.1 + 7300 0.66 0.762721
Target:  5'- gCcgCUGGCgc-GGCGCCUgagCGGaCCGAc -3'
miRNA:   3'- -GuaGACCGaguCCGCGGAa--GUC-GGUU- -5'
6528 3' -57.8 NC_001847.1 + 23688 0.66 0.76175
Target:  5'- --aCUGGCUCugguccacgaacgGGGCGCggUCGGCgCAGa -3'
miRNA:   3'- guaGACCGAG-------------UCCGCGgaAGUCG-GUU- -5'
6528 3' -57.8 NC_001847.1 + 102448 0.66 0.752953
Target:  5'- aCAgcgGGCaggUCGGGCGCCccucCAGCCAc -3'
miRNA:   3'- -GUagaCCG---AGUCCGCGGaa--GUCGGUu -5'
6528 3' -57.8 NC_001847.1 + 116581 0.66 0.752953
Target:  5'- gCAUCUGcGCUCuGGGCGCagcgCuGCCGc -3'
miRNA:   3'- -GUAGAC-CGAG-UCCGCGgaa-GuCGGUu -5'
6528 3' -57.8 NC_001847.1 + 52933 0.66 0.743073
Target:  5'- uGUCUGGCgcgguUCGaccgaggccgcGGCGUCUUUGGCCGu -3'
miRNA:   3'- gUAGACCG-----AGU-----------CCGCGGAAGUCGGUu -5'
6528 3' -57.8 NC_001847.1 + 78340 0.66 0.733092
Target:  5'- ----cGGCUUGGGCGCCgcggCGGCgAAc -3'
miRNA:   3'- guagaCCGAGUCCGCGGaa--GUCGgUU- -5'
6528 3' -57.8 NC_001847.1 + 53015 0.67 0.712864
Target:  5'- gGUCUGGCaucCGGGCGUCgggCGGCa-- -3'
miRNA:   3'- gUAGACCGa--GUCCGCGGaa-GUCGguu -5'
6528 3' -57.8 NC_001847.1 + 107113 0.67 0.712864
Target:  5'- gCGUCUGGCgugugCAGGCGCUcguaagcgCGGCa-- -3'
miRNA:   3'- -GUAGACCGa----GUCCGCGGaa------GUCGguu -5'
6528 3' -57.8 NC_001847.1 + 39808 0.67 0.692349
Target:  5'- --cCUGGCUgcgcccCcuGCGCCUUCGGCCc- -3'
miRNA:   3'- guaGACCGA------GucCGCGGAAGUCGGuu -5'
6528 3' -57.8 NC_001847.1 + 85672 0.67 0.682008
Target:  5'- cCGUgCUGGCgcgCAGGCGCUcgCcGCCGu -3'
miRNA:   3'- -GUA-GACCGa--GUCCGCGGaaGuCGGUu -5'
6528 3' -57.8 NC_001847.1 + 89869 0.67 0.661206
Target:  5'- aCGUCaaggaUGGCUUuugGGGCGCCUUCGGggacgcggcgcCCGAg -3'
miRNA:   3'- -GUAG-----ACCGAG---UCCGCGGAAGUC-----------GGUU- -5'
6528 3' -57.8 NC_001847.1 + 28080 0.67 0.661206
Target:  5'- gGUCUGGUgcUguGGCGCCUgcccggGGCCGc -3'
miRNA:   3'- gUAGACCG--AguCCGCGGAag----UCGGUu -5'
6528 3' -57.8 NC_001847.1 + 121381 0.67 0.661206
Target:  5'- ----aGGUUCAGGCuGCCcaUCAGCCGc -3'
miRNA:   3'- guagaCCGAGUCCG-CGGa-AGUCGGUu -5'
6528 3' -57.8 NC_001847.1 + 127836 0.68 0.61938
Target:  5'- gCGUCgguccGCUCAGGCGCCgc--GCCAGc -3'
miRNA:   3'- -GUAGac---CGAGUCCGCGGaaguCGGUU- -5'
6528 3' -57.8 NC_001847.1 + 2413 0.69 0.588085
Target:  5'- ---gUGGCUCGcuGCGCCgcuUCGGCCAAg -3'
miRNA:   3'- guagACCGAGUc-CGCGGa--AGUCGGUU- -5'
6528 3' -57.8 NC_001847.1 + 13870 0.69 0.57771
Target:  5'- ---gUGGCgaggggGGGCGCCUUUGGCCGGg -3'
miRNA:   3'- guagACCGag----UCCGCGGAAGUCGGUU- -5'
6528 3' -57.8 NC_001847.1 + 21363 0.69 0.57771
Target:  5'- cCGUCggcGGCUCGGGcCGCCUcgggCGGCUc- -3'
miRNA:   3'- -GUAGa--CCGAGUCC-GCGGAa---GUCGGuu -5'
6528 3' -57.8 NC_001847.1 + 123648 0.69 0.57771
Target:  5'- --cUUGGCUgaAGGCGCCUg-AGCCAGa -3'
miRNA:   3'- guaGACCGAg-UCCGCGGAagUCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.