miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6528 5' -60.1 NC_001847.1 + 44594 0.66 0.732551
Target:  5'- cCCUCGcGCgcggCGAGg--GCCGCCagGGCg -3'
miRNA:   3'- -GGGGC-CG----GCUCaaaCGGCGGaaCCGa -5'
6528 5' -60.1 NC_001847.1 + 753 0.66 0.732551
Target:  5'- cCCCCuaGGgCGAGgccggcccGCCGCCggcGGCg -3'
miRNA:   3'- -GGGG--CCgGCUCaaa-----CGGCGGaa-CCGa -5'
6528 5' -60.1 NC_001847.1 + 103566 0.66 0.732551
Target:  5'- cCCCCuaGGgCGAGgccggcccGCCGCCggcGGCg -3'
miRNA:   3'- -GGGG--CCgGCUCaaa-----CGGCGGaa-CCGa -5'
6528 5' -60.1 NC_001847.1 + 13709 0.66 0.732551
Target:  5'- aCCCGGCgGcGGUcggGCCGCUcaacGGCUc -3'
miRNA:   3'- gGGGCCGgC-UCAaa-CGGCGGaa--CCGA- -5'
6528 5' -60.1 NC_001847.1 + 43807 0.66 0.730627
Target:  5'- gCgCCGGUCGAGggcgacggcgGCCGCUUcuuugccgcgcUGGCg -3'
miRNA:   3'- -GgGGCCGGCUCaaa-------CGGCGGA-----------ACCGa -5'
6528 5' -60.1 NC_001847.1 + 101055 0.66 0.72677
Target:  5'- aCCC-GCCGAGgccggccccgggGCCGCCgcgggGGCc -3'
miRNA:   3'- gGGGcCGGCUCaaa---------CGGCGGaa---CCGa -5'
6528 5' -60.1 NC_001847.1 + 100971 0.66 0.722899
Target:  5'- cCCCCGGcCCGcAGcgccucaGCCGCCUcGcGCa -3'
miRNA:   3'- -GGGGCC-GGC-UCaaa----CGGCGGAaC-CGa -5'
6528 5' -60.1 NC_001847.1 + 2362 0.66 0.722899
Target:  5'- gCCCGGCCGcGUcgGCgGCggcGGCUu -3'
miRNA:   3'- gGGGCCGGCuCAaaCGgCGgaaCCGA- -5'
6528 5' -60.1 NC_001847.1 + 102210 0.66 0.722899
Target:  5'- cCCCCGGCCcc----GCCGCC--GGCc -3'
miRNA:   3'- -GGGGCCGGcucaaaCGGCGGaaCCGa -5'
6528 5' -60.1 NC_001847.1 + 78393 0.66 0.722899
Target:  5'- --aUGGCCGAGgaccccGCCGCUgcgGGCg -3'
miRNA:   3'- gggGCCGGCUCaaa---CGGCGGaa-CCGa -5'
6528 5' -60.1 NC_001847.1 + 124223 0.66 0.722899
Target:  5'- -gCCGGCCGAGgauucggGCCGgCCgagcgagcgGGCc -3'
miRNA:   3'- ggGGCCGGCUCaaa----CGGC-GGaa-------CCGa -5'
6528 5' -60.1 NC_001847.1 + 115478 0.66 0.722899
Target:  5'- aCCCGGUCGcAGUUuccgGCgGCCg-GGCc -3'
miRNA:   3'- gGGGCCGGC-UCAAa---CGgCGGaaCCGa -5'
6528 5' -60.1 NC_001847.1 + 21410 0.66 0.722899
Target:  5'- -gCCGGCCGAGgauucggGCCGgCCgagcgagcgGGCc -3'
miRNA:   3'- ggGGCCGGCUCaaa----CGGC-GGaa-------CCGa -5'
6528 5' -60.1 NC_001847.1 + 73789 0.66 0.722899
Target:  5'- uCgCCGGUgCGGGgcUGCCuGCCggugGGCUa -3'
miRNA:   3'- -GgGGCCG-GCUCaaACGG-CGGaa--CCGA- -5'
6528 5' -60.1 NC_001847.1 + 105175 0.66 0.722899
Target:  5'- gCCCGGCCGcGUcgGCgGCggcGGCUu -3'
miRNA:   3'- gGGGCCGGCuCAaaCGgCGgaaCCGA- -5'
6528 5' -60.1 NC_001847.1 + 127329 0.66 0.713172
Target:  5'- aCCgGcGCCGAGgcggccgGCUGCCgcGGCa -3'
miRNA:   3'- gGGgC-CGGCUCaaa----CGGCGGaaCCGa -5'
6528 5' -60.1 NC_001847.1 + 100175 0.66 0.713172
Target:  5'- cCCCUGGCCGccug-GCCGgCC--GGCUa -3'
miRNA:   3'- -GGGGCCGGCucaaaCGGC-GGaaCCGA- -5'
6528 5' -60.1 NC_001847.1 + 54396 0.66 0.713172
Target:  5'- gCCgCGGgCGAGgcgggcGCCGCCgcggUUGGCc -3'
miRNA:   3'- -GGgGCCgGCUCaaa---CGGCGG----AACCGa -5'
6528 5' -60.1 NC_001847.1 + 48660 0.66 0.713172
Target:  5'- cCCCCGcaGCCucGUcguccgUGCCGCCgucGGCg -3'
miRNA:   3'- -GGGGC--CGGcuCAa-----ACGGCGGaa-CCGa -5'
6528 5' -60.1 NC_001847.1 + 6345 0.66 0.712196
Target:  5'- gCCCCGGCggcaaccgcgccgCGGGcguaGCCGCUgcGGCa -3'
miRNA:   3'- -GGGGCCG-------------GCUCaaa-CGGCGGaaCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.