miRNA display CGI


Results 1 - 20 of 223 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6529 3' -53.4 NC_001847.1 + 79299 0.66 0.958682
Target:  5'- aCGGCGCCGGCuggcaGCUGCGcgucAUGGaCGAc- -3'
miRNA:   3'- -GUCGCGGCUGc----UGAUGC----UAUC-GCUaa -5'
6529 3' -53.4 NC_001847.1 + 38426 0.66 0.958682
Target:  5'- gGGgGCCGACGAgUggcuagacgACGAgauUGGCGAc- -3'
miRNA:   3'- gUCgCGGCUGCUgA---------UGCU---AUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 52246 0.66 0.958682
Target:  5'- gGGCGCCGcgcgccGCGGCUugGcu-GCGGc- -3'
miRNA:   3'- gUCGCGGC------UGCUGAugCuauCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 31135 0.66 0.958682
Target:  5'- uGGCGcCCGACGAgCUGcCGGccgcGGCGGUg -3'
miRNA:   3'- gUCGC-GGCUGCU-GAU-GCUa---UCGCUAa -5'
6529 3' -53.4 NC_001847.1 + 54682 0.66 0.958682
Target:  5'- gCGGC-CCGACGGCgGCGGcGGCGc-- -3'
miRNA:   3'- -GUCGcGGCUGCUGaUGCUaUCGCuaa -5'
6529 3' -53.4 NC_001847.1 + 76697 0.66 0.958682
Target:  5'- gCGGCGCUG-CGGCUGgaaauggcCGAcGGCGAg- -3'
miRNA:   3'- -GUCGCGGCuGCUGAU--------GCUaUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 103908 0.66 0.958682
Target:  5'- gGGCGCCG-CGGCcGCG--GGCGGc- -3'
miRNA:   3'- gUCGCGGCuGCUGaUGCuaUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 134091 0.66 0.958682
Target:  5'- cCGGCGCCGcCGcUUGCucUGGCGAg- -3'
miRNA:   3'- -GUCGCGGCuGCuGAUGcuAUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 72710 0.66 0.958682
Target:  5'- -cGCGCCGACGAaaacacgcucacCUACGcgcugaugGGCGGa- -3'
miRNA:   3'- guCGCGGCUGCU------------GAUGCua------UCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 1095 0.66 0.958682
Target:  5'- gGGCGCCG-CGGCcGCG--GGCGGc- -3'
miRNA:   3'- gUCGCGGCuGCUGaUGCuaUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 125603 0.66 0.958682
Target:  5'- gCAGCGCUGGCGcACgcacggACGcUAGCGc-- -3'
miRNA:   3'- -GUCGCGGCUGC-UGa-----UGCuAUCGCuaa -5'
6529 3' -53.4 NC_001847.1 + 29291 0.66 0.958682
Target:  5'- gCGGCGCUGGCGGCagaggccGCGGccGCGGa- -3'
miRNA:   3'- -GUCGCGGCUGCUGa------UGCUauCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 88885 0.66 0.958682
Target:  5'- gCGGCGgCGGCGGCUcccgcCGggGGCGGc- -3'
miRNA:   3'- -GUCGCgGCUGCUGAu----GCuaUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 35832 0.66 0.958682
Target:  5'- gAGCGCauCGACGcGCUGCGcgAGCuGAg- -3'
miRNA:   3'- gUCGCG--GCUGC-UGAUGCuaUCG-CUaa -5'
6529 3' -53.4 NC_001847.1 + 89943 0.66 0.958682
Target:  5'- gCGGCGCUcgcgcugcgaGACGACUgccagcgcgcgGCGGaAGCGGUg -3'
miRNA:   3'- -GUCGCGG----------CUGCUGA-----------UGCUaUCGCUAa -5'
6529 3' -53.4 NC_001847.1 + 18754 0.66 0.958682
Target:  5'- gAGCGCCGccgccGCGGCUAaGGcGGCGGc- -3'
miRNA:   3'- gUCGCGGC-----UGCUGAUgCUaUCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 37270 0.66 0.958682
Target:  5'- -cGCGCCGcCGACUGgGAc-GCGGg- -3'
miRNA:   3'- guCGCGGCuGCUGAUgCUauCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 87701 0.66 0.958682
Target:  5'- gCGGCGCCGcgGCGGCgGCGA-AGcCGAc- -3'
miRNA:   3'- -GUCGCGGC--UGCUGaUGCUaUC-GCUaa -5'
6529 3' -53.4 NC_001847.1 + 58813 0.66 0.958682
Target:  5'- -uGCGCCGGCGcCUGggcCGGU-GCGAg- -3'
miRNA:   3'- guCGCGGCUGCuGAU---GCUAuCGCUaa -5'
6529 3' -53.4 NC_001847.1 + 78042 0.66 0.958682
Target:  5'- -uGCGCgCGGCGGCgcgGCGGUccAGCGc-- -3'
miRNA:   3'- guCGCG-GCUGCUGa--UGCUA--UCGCuaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.