miRNA display CGI


Results 1 - 20 of 1086 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6529 5' -58.3 NC_001847.1 + 14025 0.66 0.824758
Target:  5'- -aGGCgGCGGCgcagcgcgcaguuuaCC-GUCGCGGCGCa -3'
miRNA:   3'- gaUUGgCGCCGg--------------GGuUAGUGCCGCGg -5'
6529 5' -58.3 NC_001847.1 + 20077 0.66 0.823919
Target:  5'- ---gUgGCGGCUCC---CGCGGCGCg -3'
miRNA:   3'- gauuGgCGCCGGGGuuaGUGCCGCGg -5'
6529 5' -58.3 NC_001847.1 + 2077 0.66 0.823919
Target:  5'- gUGGCgGCGagcGCCCCGcggggcccgCGCGGCGgCg -3'
miRNA:   3'- gAUUGgCGC---CGGGGUua-------GUGCCGCgG- -5'
6529 5' -58.3 NC_001847.1 + 104890 0.66 0.823919
Target:  5'- gUGGCgGCGagcGCCCCGcggggcccgCGCGGCGgCg -3'
miRNA:   3'- gAUUGgCGC---CGGGGUua-------GUGCCGCgG- -5'
6529 5' -58.3 NC_001847.1 + 49947 0.66 0.823919
Target:  5'- --cGCCGUGGCg-----CGCGGUGCCg -3'
miRNA:   3'- gauUGGCGCCGggguuaGUGCCGCGG- -5'
6529 5' -58.3 NC_001847.1 + 60630 0.66 0.823919
Target:  5'- --cGCCGCGucucGUCCagcgCGCGGCGCa -3'
miRNA:   3'- gauUGGCGC----CGGGguuaGUGCCGCGg -5'
6529 5' -58.3 NC_001847.1 + 121760 0.66 0.823919
Target:  5'- ---cCCGCGGCgcgCCCGGaCGUGcGCGCCg -3'
miRNA:   3'- gauuGGCGCCG---GGGUUaGUGC-CGCGG- -5'
6529 5' -58.3 NC_001847.1 + 65690 0.66 0.823919
Target:  5'- --cGCCGCcGCCgCGcgCGCGcCGCCg -3'
miRNA:   3'- gauUGGCGcCGGgGUuaGUGCcGCGG- -5'
6529 5' -58.3 NC_001847.1 + 30497 0.66 0.823919
Target:  5'- ----gCGCGGCCCuCGggCGC-GCGCUa -3'
miRNA:   3'- gauugGCGCCGGG-GUuaGUGcCGCGG- -5'
6529 5' -58.3 NC_001847.1 + 82074 0.66 0.823919
Target:  5'- -gAGCCG-GGCUcggcgucugggCCAAgCGCGGgGCCa -3'
miRNA:   3'- gaUUGGCgCCGG-----------GGUUaGUGCCgCGG- -5'
6529 5' -58.3 NC_001847.1 + 73138 0.66 0.823919
Target:  5'- -cGGCCGCagGGCCCCGcgCcgcucuuCGG-GCCc -3'
miRNA:   3'- gaUUGGCG--CCGGGGUuaGu------GCCgCGG- -5'
6529 5' -58.3 NC_001847.1 + 55887 0.66 0.823919
Target:  5'- ---cCCGCGGCCCgAcgC-CGGCuaGCa -3'
miRNA:   3'- gauuGGCGCCGGGgUuaGuGCCG--CGg -5'
6529 5' -58.3 NC_001847.1 + 86954 0.66 0.823919
Target:  5'- --cGCCGCGcGCCCCGAgcccguguUCACGcccaUGCUg -3'
miRNA:   3'- gauUGGCGC-CGGGGUU--------AGUGCc---GCGG- -5'
6529 5' -58.3 NC_001847.1 + 96075 0.66 0.823919
Target:  5'- -gAGCCgGCGGCggCAAUgGCGGaGCCg -3'
miRNA:   3'- gaUUGG-CGCCGggGUUAgUGCCgCGG- -5'
6529 5' -58.3 NC_001847.1 + 15251 0.66 0.823919
Target:  5'- -cGGCgGCGGCCacgcacgCGAUCGCcGCaGCCg -3'
miRNA:   3'- gaUUGgCGCCGGg------GUUAGUGcCG-CGG- -5'
6529 5' -58.3 NC_001847.1 + 93878 0.66 0.823919
Target:  5'- gCUGACCGCGcGCCggCAAaaaAUGGCaGCCc -3'
miRNA:   3'- -GAUUGGCGC-CGGg-GUUag-UGCCG-CGG- -5'
6529 5' -58.3 NC_001847.1 + 116423 0.66 0.823919
Target:  5'- -cAACCGCccgcuGGCgCUCcc-CGCGGCGCUg -3'
miRNA:   3'- gaUUGGCG-----CCG-GGGuuaGUGCCGCGG- -5'
6529 5' -58.3 NC_001847.1 + 37550 0.66 0.823919
Target:  5'- -cGACgGgCGGCCCU--UCggaagacgcgGCGGCGCUg -3'
miRNA:   3'- gaUUGgC-GCCGGGGuuAG----------UGCCGCGG- -5'
6529 5' -58.3 NC_001847.1 + 81552 0.66 0.823919
Target:  5'- --cACCGUGGCCCgCAAaaaggcaucCACGuCGCCc -3'
miRNA:   3'- gauUGGCGCCGGG-GUUa--------GUGCcGCGG- -5'
6529 5' -58.3 NC_001847.1 + 46918 0.66 0.823919
Target:  5'- -cGGCCuCGGCUCCGG-CGaGGCGCUu -3'
miRNA:   3'- gaUUGGcGCCGGGGUUaGUgCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.