miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
653 5' -56.7 AC_000017.1 + 2175 0.77 0.082291
Target:  5'- aGCAGCAggaggaagccagGCGGCGGCGGCgGCaggaGCAGAg -3'
miRNA:   3'- cCGUCGU------------UGUCGUCGCCGgUG----UGUCU- -5'
653 5' -56.7 AC_000017.1 + 3662 0.67 0.433195
Target:  5'- uGguGCucAUGGCGGCGGCUGCugcaaaACAGAu -3'
miRNA:   3'- cCguCGu-UGUCGUCGCCGGUG------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 3863 0.76 0.107272
Target:  5'- uGGCuGCAGCGGCugaAGCGGCgGCGgAGGc -3'
miRNA:   3'- -CCGuCGUUGUCG---UCGCCGgUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 6494 0.67 0.423298
Target:  5'- uGGUc-CAGCAGaGGCGGCCGCccuugcgcgaGCAGAa -3'
miRNA:   3'- -CCGucGUUGUCgUCGCCGGUG----------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 8103 0.7 0.292441
Target:  5'- cGCAGUAcUGGCAGCGG-UGCACGGGc -3'
miRNA:   3'- cCGUCGUuGUCGUCGCCgGUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 8543 0.68 0.349269
Target:  5'- cGCGGCG--GGCGGUgGGCCGCGgGGGu -3'
miRNA:   3'- cCGUCGUugUCGUCG-CCGGUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 9502 0.69 0.332262
Target:  5'- uGGUcucGGUGACGGC-GCGGCCGuucuCGCGGGg -3'
miRNA:   3'- -CCG---UCGUUGUCGuCGCCGGU----GUGUCU- -5'
653 5' -56.7 AC_000017.1 + 9752 0.78 0.079885
Target:  5'- gGGCGGCAGCgGGCGGCGGUcgggguuguuuCugGCGGAg -3'
miRNA:   3'- -CCGUCGUUG-UCGUCGCCG-----------GugUGUCU- -5'
653 5' -56.7 AC_000017.1 + 9817 0.68 0.375924
Target:  5'- aGGCGGUcuugaGACGGCGGaUGGUCG-ACAGAa -3'
miRNA:   3'- -CCGUCG-----UUGUCGUC-GCCGGUgUGUCU- -5'
653 5' -56.7 AC_000017.1 + 10012 0.66 0.484596
Target:  5'- uGCGGCGGCGGCGGaguuuGGCCG--UAGGu -3'
miRNA:   3'- cCGUCGUUGUCGUCg----CCGGUguGUCU- -5'
653 5' -56.7 AC_000017.1 + 10203 0.67 0.403918
Target:  5'- uGguGUAAguGCAGuUGGCCAUaACGGAc -3'
miRNA:   3'- cCguCGUUguCGUC-GCCGGUG-UGUCU- -5'
653 5' -56.7 AC_000017.1 + 10354 0.69 0.31587
Target:  5'- cGGCGGCGGCuGGCGGUagaggGGCCAgCGUAGGg -3'
miRNA:   3'- -CCGUCGUUG-UCGUCG-----CCGGU-GUGUCU- -5'
653 5' -56.7 AC_000017.1 + 10466 0.71 0.249701
Target:  5'- -cCGGCGGCGGUGGUGGaggCGCGCGGAa -3'
miRNA:   3'- ccGUCGUUGUCGUCGCCg--GUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 10761 0.71 0.21814
Target:  5'- gGGCGGUAaccgcauggaucACGGCGGaCGGCCggAUACGGGg -3'
miRNA:   3'- -CCGUCGU------------UGUCGUC-GCCGG--UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 10848 0.7 0.270392
Target:  5'- aGCuAGC-GCAGCAGCcGCCGCGCcuGGAa -3'
miRNA:   3'- cCG-UCGuUGUCGUCGcCGGUGUG--UCU- -5'
653 5' -56.7 AC_000017.1 + 11090 0.77 0.089931
Target:  5'- cGGCaagAGCAAgAGCAGCGGCagaCAUGCAGGg -3'
miRNA:   3'- -CCG---UCGUUgUCGUCGCCG---GUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 12089 0.72 0.195402
Target:  5'- uGGCuGGCAcgGGCAGCGGCgAUAgAGAg -3'
miRNA:   3'- -CCG-UCGUugUCGUCGCCGgUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 12112 0.69 0.332262
Target:  5'- aGGCuguGCAuCAGCucGCGGUCGCugAGc -3'
miRNA:   3'- -CCGu--CGUuGUCGu-CGCCGGUGugUCu -5'
653 5' -56.7 AC_000017.1 + 13058 0.69 0.321537
Target:  5'- aGCAGCAACAGCgcgaguugggcgucAGCaagcuagacacGGUCGCGCGGu -3'
miRNA:   3'- cCGUCGUUGUCG--------------UCG-----------CCGGUGUGUCu -5'
653 5' -56.7 AC_000017.1 + 13985 0.73 0.184829
Target:  5'- cGGCAGaCGACAGCAGCGuCCuggauUugGGAg -3'
miRNA:   3'- -CCGUC-GUUGUCGUCGCcGGu----GugUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.