miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
653 5' -56.7 AC_000017.1 + 31462 0.68 0.366888
Target:  5'- --aAGguGCGGCAGUGGCUACGguaAGAa -3'
miRNA:   3'- ccgUCguUGUCGUCGCCGGUGUg--UCU- -5'
653 5' -56.7 AC_000017.1 + 15211 0.68 0.365993
Target:  5'- aGGCcgaGGCAGCGGCcgaAGCuGCCGCccccgcuGCGGAg -3'
miRNA:   3'- -CCG---UCGUUGUCG---UCGcCGGUG-------UGUCU- -5'
653 5' -56.7 AC_000017.1 + 17364 0.68 0.358003
Target:  5'- aGGUuuuggacGCGGCcGCAGCGGCCGCcuGCAc- -3'
miRNA:   3'- -CCGu------CGUUGuCGUCGCCGGUG--UGUcu -5'
653 5' -56.7 AC_000017.1 + 8543 0.68 0.349269
Target:  5'- cGCGGCG--GGCGGUgGGCCGCGgGGGu -3'
miRNA:   3'- cCGUCGUugUCGUCG-CCGGUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 9502 0.69 0.332262
Target:  5'- uGGUcucGGUGACGGC-GCGGCCGuucuCGCGGGg -3'
miRNA:   3'- -CCG---UCGUUGUCGuCGCCGGU----GUGUCU- -5'
653 5' -56.7 AC_000017.1 + 12112 0.69 0.332262
Target:  5'- aGGCuguGCAuCAGCucGCGGUCGCugAGc -3'
miRNA:   3'- -CCGu--CGUuGUCGu-CGCCGGUGugUCu -5'
653 5' -56.7 AC_000017.1 + 13058 0.69 0.321537
Target:  5'- aGCAGCAACAGCgcgaguugggcgucAGCaagcuagacacGGUCGCGCGGu -3'
miRNA:   3'- cCGUCGUUGUCG--------------UCG-----------CCGGUGUGUCu -5'
653 5' -56.7 AC_000017.1 + 26293 0.69 0.315871
Target:  5'- cGGCGGCAGCuGCAGCuucuuuuuggGuGCCAucCugGGAa -3'
miRNA:   3'- -CCGUCGUUGuCGUCG----------C-CGGU--GugUCU- -5'
653 5' -56.7 AC_000017.1 + 24204 0.69 0.315871
Target:  5'- uGGCGGCAucgguggagGCGGUGGUGGCgaACuCAGAg -3'
miRNA:   3'- -CCGUCGU---------UGUCGUCGCCGg-UGuGUCU- -5'
653 5' -56.7 AC_000017.1 + 10354 0.69 0.31587
Target:  5'- cGGCGGCGGCuGGCGGUagaggGGCCAgCGUAGGg -3'
miRNA:   3'- -CCGUCGUUG-UCGUCG-----CCGGU-GUGUCU- -5'
653 5' -56.7 AC_000017.1 + 16267 0.69 0.300097
Target:  5'- gGGCGGCAgugccgggucgGCGGCGGUGGCgACGu--- -3'
miRNA:   3'- -CCGUCGU-----------UGUCGUCGCCGgUGUgucu -5'
653 5' -56.7 AC_000017.1 + 30530 0.7 0.292441
Target:  5'- aGGC-GCAA-AGCAGCGGCagaGCAGGa -3'
miRNA:   3'- -CCGuCGUUgUCGUCGCCGgugUGUCU- -5'
653 5' -56.7 AC_000017.1 + 8103 0.7 0.292441
Target:  5'- cGCAGUAcUGGCAGCGG-UGCACGGGc -3'
miRNA:   3'- cCGUCGUuGUCGUCGCCgGUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 26843 0.7 0.277589
Target:  5'- cGGCGGCAGCAGCAGgaGGaggaGCGCu-- -3'
miRNA:   3'- -CCGUCGUUGUCGUCg-CCgg--UGUGucu -5'
653 5' -56.7 AC_000017.1 + 10848 0.7 0.270392
Target:  5'- aGCuAGC-GCAGCAGCcGCCGCGCcuGGAa -3'
miRNA:   3'- cCG-UCGuUGUCGUCGcCGGUGUG--UCU- -5'
653 5' -56.7 AC_000017.1 + 26606 0.7 0.256449
Target:  5'- --gGGCuAACGGCGGCGGCUGCuuGGAc -3'
miRNA:   3'- ccgUCG-UUGUCGUCGCCGGUGugUCU- -5'
653 5' -56.7 AC_000017.1 + 15283 0.7 0.256449
Target:  5'- cGCAGCGgggGCGGCAGCuucGGCCGCugccuCGGc -3'
miRNA:   3'- cCGUCGU---UGUCGUCG---CCGGUGu----GUCu -5'
653 5' -56.7 AC_000017.1 + 10466 0.71 0.249701
Target:  5'- -cCGGCGGCGGUGGUGGaggCGCGCGGAa -3'
miRNA:   3'- ccGUCGUUGUCGUCGCCg--GUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 17590 0.71 0.236646
Target:  5'- uGGCgacGGCGACGGCGGCGGCgGguucCAguGGu -3'
miRNA:   3'- -CCG---UCGUUGUCGUCGCCGgU----GUguCU- -5'
653 5' -56.7 AC_000017.1 + 18862 0.71 0.236646
Target:  5'- cGCGGCGacucaGCAGCuccucuGGCGGCgACAUGGAc -3'
miRNA:   3'- cCGUCGU-----UGUCG------UCGCCGgUGUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.