miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 3' -55.5 NC_001847.1 + 69361 0.67 0.885022
Target:  5'- gCUggcgCGCGCGGcgGUCuuuGCggcGGugGCGc -3'
miRNA:   3'- aGAa---GCGCGUCuaCAG---CGa--CCugCGC- -5'
6530 3' -55.5 NC_001847.1 + 98230 0.67 0.885022
Target:  5'- uUCUUCugcacggcaGCGUAGAUGUU-CUGGAgGCu -3'
miRNA:   3'- -AGAAG---------CGCGUCUACAGcGACCUgCGc -5'
6530 3' -55.5 NC_001847.1 + 86515 0.67 0.885022
Target:  5'- --gUCGCGCGGcg---GCUGGGCGCc -3'
miRNA:   3'- agaAGCGCGUCuacagCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 72446 0.67 0.885022
Target:  5'- ---aUGCGCA-----CGCUGGACGCGg -3'
miRNA:   3'- agaaGCGCGUcuacaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 36102 0.67 0.885022
Target:  5'- ----aGCGCGGcgacgCGCUGGGCGCc -3'
miRNA:   3'- agaagCGCGUCuaca-GCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 63784 0.67 0.882214
Target:  5'- ---cCGCGCGGAcgcgggcuuucugGUCGCUGuGCGCa -3'
miRNA:   3'- agaaGCGCGUCUa------------CAGCGACcUGCGc -5'
6530 3' -55.5 NC_001847.1 + 3904 0.67 0.877935
Target:  5'- --gUUGCGCGcGGUGgCGC-GGACGCa -3'
miRNA:   3'- agaAGCGCGU-CUACaGCGaCCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 80867 0.67 0.873575
Target:  5'- ---aCGCGCGGAUGagcgccucgagccgcUCGUcGGGCGCc -3'
miRNA:   3'- agaaGCGCGUCUAC---------------AGCGaCCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 51217 0.67 0.870625
Target:  5'- aCUUCGaGCGGGcccUGcUCGC-GGGCGCGc -3'
miRNA:   3'- aGAAGCgCGUCU---AC-AGCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 36066 0.67 0.863097
Target:  5'- ---cCGCGUucacAGgcG-CGCUGGACGCGc -3'
miRNA:   3'- agaaGCGCG----UCuaCaGCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 63853 0.67 0.863097
Target:  5'- cCUgCGCGCGGggGgcgcaugCGCgacggcugGGACGCGc -3'
miRNA:   3'- aGAaGCGCGUCuaCa------GCGa-------CCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 34676 0.67 0.863097
Target:  5'- ---cCGCGCAGcgGcaggaggagCGCUGG-CGCGa -3'
miRNA:   3'- agaaGCGCGUCuaCa--------GCGACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 123691 0.67 0.855359
Target:  5'- ---aCGCGCAcGGUaGcCGCUGG-CGCGg -3'
miRNA:   3'- agaaGCGCGU-CUA-CaGCGACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 97809 0.67 0.855359
Target:  5'- --gUCGCGCGcGUGgccgCGUcGGGCGCGu -3'
miRNA:   3'- agaAGCGCGUcUACa---GCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 20771 0.67 0.855359
Target:  5'- gUCggCGCGCAGAUG-CGagggGGGCuGCa -3'
miRNA:   3'- -AGaaGCGCGUCUACaGCga--CCUG-CGc -5'
6530 3' -55.5 NC_001847.1 + 131689 0.67 0.847414
Target:  5'- ---cCGCGCAGAacgCGCugUGGGCGCu -3'
miRNA:   3'- agaaGCGCGUCUacaGCG--ACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 133345 0.67 0.847414
Target:  5'- cUCggCGCGCAGGgcgUGCUGcugcucucGACGCGg -3'
miRNA:   3'- -AGaaGCGCGUCUacaGCGAC--------CUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 28876 0.67 0.847414
Target:  5'- ---cCGCGCAGAacgCGCugUGGGCGCu -3'
miRNA:   3'- agaaGCGCGUCUacaGCG--ACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 30532 0.67 0.847414
Target:  5'- cUCggCGCGCAGGgcgUGCUGcugcucucGACGCGg -3'
miRNA:   3'- -AGaaGCGCGUCUacaGCGAC--------CUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 31894 0.68 0.839272
Target:  5'- --gUCGCGCGGAUGcCGCcgcagaucacGGcCGCGg -3'
miRNA:   3'- agaAGCGCGUCUACaGCGa---------CCuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.