miRNA display CGI


Results 21 - 40 of 494 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 81001 0.66 0.833639
Target:  5'- aCGCGCUGCUgGACcagGAggAGCGCaUGGg -3'
miRNA:   3'- -GUGCGGCGGgUUG---CUagUCGCGcACC- -5'
6530 5' -57.9 NC_001847.1 + 130482 0.66 0.833639
Target:  5'- gGCcCUGCUCGACG--CGGCGCGUcGGg -3'
miRNA:   3'- gUGcGGCGGGUUGCuaGUCGCGCA-CC- -5'
6530 5' -57.9 NC_001847.1 + 30145 0.66 0.833639
Target:  5'- aCGCGCggcgCGCCguGCGcccUgGGUGCGUGGc -3'
miRNA:   3'- -GUGCG----GCGGguUGCu--AgUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 71916 0.66 0.833639
Target:  5'- gCGCGCCGUCCAgguagauacgcACGAcgCGgagagcGCGCGcGGg -3'
miRNA:   3'- -GUGCGGCGGGU-----------UGCUa-GU------CGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 132948 0.66 0.833639
Target:  5'- -cUGCCGCCC--CGAggucgCGGCGCGgcucgcGGa -3'
miRNA:   3'- guGCGGCGGGuuGCUa----GUCGCGCa-----CC- -5'
6530 5' -57.9 NC_001847.1 + 90241 0.66 0.833639
Target:  5'- uCGCGCaCGCCCc-CGucccgCAGCaCGUGGu -3'
miRNA:   3'- -GUGCG-GCGGGuuGCua---GUCGcGCACC- -5'
6530 5' -57.9 NC_001847.1 + 27669 0.66 0.833639
Target:  5'- gGCcCUGCUCGACG--CGGCGCGUcGGg -3'
miRNA:   3'- gUGcGGCGGGUUGCuaGUCGCGCA-CC- -5'
6530 5' -57.9 NC_001847.1 + 83997 0.66 0.833639
Target:  5'- gUACGgguCCaGCgCCAGCGAg-AGCGUGUGGu -3'
miRNA:   3'- -GUGC---GG-CG-GGUUGCUagUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 81423 0.66 0.833639
Target:  5'- gCGCGCCgauccGCCCcGCGAgccgccggCGGCGCGc-- -3'
miRNA:   3'- -GUGCGG-----CGGGuUGCUa-------GUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 13039 0.66 0.833639
Target:  5'- gCAUGCCGCCCAcUGA--GGCGCu--- -3'
miRNA:   3'- -GUGCGGCGGGUuGCUagUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 119590 0.66 0.833639
Target:  5'- -cCGCgGCCCGACGGcCGcGCGCGcaccGGc -3'
miRNA:   3'- guGCGgCGGGUUGCUaGU-CGCGCa---CC- -5'
6530 5' -57.9 NC_001847.1 + 58056 0.66 0.833639
Target:  5'- gCGCGCgGgCCGcCGAUUGGCGCGc-- -3'
miRNA:   3'- -GUGCGgCgGGUuGCUAGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 38495 0.66 0.833639
Target:  5'- gACGUCGCCgGGgGG-CGGCGCGg-- -3'
miRNA:   3'- gUGCGGCGGgUUgCUaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 130485 0.66 0.833639
Target:  5'- gACGCCGCaagCAACG-UCGgGCG-GUGGc -3'
miRNA:   3'- gUGCGGCGg--GUUGCuAGU-CGCgCACC- -5'
6530 5' -57.9 NC_001847.1 + 94606 0.66 0.833639
Target:  5'- gCGCGCUGCCgCAGCacGUC-GCGCGUc- -3'
miRNA:   3'- -GUGCGGCGG-GUUGc-UAGuCGCGCAcc -5'
6530 5' -57.9 NC_001847.1 + 121019 0.66 0.833639
Target:  5'- gGCcCCGCCCAucgcccgugACGAgguGCGgGUGGu -3'
miRNA:   3'- gUGcGGCGGGU---------UGCUaguCGCgCACC- -5'
6530 5' -57.9 NC_001847.1 + 75283 0.66 0.833639
Target:  5'- gCGCGCgGCCCucgGCGA-CcGCGCcUGGc -3'
miRNA:   3'- -GUGCGgCGGGu--UGCUaGuCGCGcACC- -5'
6530 5' -57.9 NC_001847.1 + 2658 0.66 0.833639
Target:  5'- gGCGCCuucGCCCGGCGGcUCGGC-CGg-- -3'
miRNA:   3'- gUGCGG---CGGGUUGCU-AGUCGcGCacc -5'
6530 5' -57.9 NC_001847.1 + 74511 0.66 0.833639
Target:  5'- uGCGCCGCgCGcuggACGAgacgCGGCGCuUGa -3'
miRNA:   3'- gUGCGGCGgGU----UGCUa---GUCGCGcACc -5'
6530 5' -57.9 NC_001847.1 + 69917 0.66 0.833639
Target:  5'- aGCGCCGCCCccguuaaaGGCGGuaaUCAuGCGCacguUGGc -3'
miRNA:   3'- gUGCGGCGGG--------UUGCU---AGU-CGCGc---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.