miRNA display CGI


Results 1 - 20 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6531 3' -59.2 NC_001847.1 + 16669 0.66 0.733322
Target:  5'- aCAGGcGCGCCCGGgccUUGCGCcGCAGg -3'
miRNA:   3'- aGUCUcCGCGGGCC---GAUGUGcCGUUu -5'
6531 3' -59.2 NC_001847.1 + 50347 0.66 0.733322
Target:  5'- aCGGAGGUGgacgaCGGCgGCGCGGCc-- -3'
miRNA:   3'- aGUCUCCGCgg---GCCGaUGUGCCGuuu -5'
6531 3' -59.2 NC_001847.1 + 80397 0.66 0.733322
Target:  5'- -uGGuGGCGCuuGGggGCcgcaACGGCAAAg -3'
miRNA:   3'- agUCuCCGCGggCCgaUG----UGCCGUUU- -5'
6531 3' -59.2 NC_001847.1 + 34783 0.66 0.733322
Target:  5'- gCGGccgcGGCGCgCGGCUACgacccGCGGCc-- -3'
miRNA:   3'- aGUCu---CCGCGgGCCGAUG-----UGCCGuuu -5'
6531 3' -59.2 NC_001847.1 + 66982 0.66 0.733322
Target:  5'- gCAGAGGCG---GGCUgcgGCGCGGCGc- -3'
miRNA:   3'- aGUCUCCGCgggCCGA---UGUGCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 44287 0.66 0.733322
Target:  5'- aCAccGGCGgCgCGGCgcgGCGCGGCGGg -3'
miRNA:   3'- aGUcuCCGCgG-GCCGa--UGUGCCGUUu -5'
6531 3' -59.2 NC_001847.1 + 51365 0.66 0.733322
Target:  5'- aCAGGGGCGCUUcgagGGCUGCcucgcCGGUg-- -3'
miRNA:   3'- aGUCUCCGCGGG----CCGAUGu----GCCGuuu -5'
6531 3' -59.2 NC_001847.1 + 37460 0.66 0.732338
Target:  5'- gCAGcGGGCcugcguuggccggGCCCGGCcugGCAgCGGCGGGu -3'
miRNA:   3'- aGUC-UCCG-------------CGGGCCGa--UGU-GCCGUUU- -5'
6531 3' -59.2 NC_001847.1 + 61722 0.66 0.732338
Target:  5'- cCAGAgGGCGCUCGGCaaucagccgauccUGCaACGuGCGAu -3'
miRNA:   3'- aGUCU-CCGCGGGCCG-------------AUG-UGC-CGUUu -5'
6531 3' -59.2 NC_001847.1 + 53724 0.66 0.72345
Target:  5'- cUCGcGGGGCGgaUCGGC-GCGCGGCGu- -3'
miRNA:   3'- -AGU-CUCCGCg-GGCCGaUGUGCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 30260 0.66 0.72345
Target:  5'- --cGGGGCGCUCGccgccaccGCUGCGgCGGCGc- -3'
miRNA:   3'- aguCUCCGCGGGC--------CGAUGU-GCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 105602 0.66 0.72345
Target:  5'- gCGGGGgaacucgaGCGCCCGcGCcGCGCgGGCGAGc -3'
miRNA:   3'- aGUCUC--------CGCGGGC-CGaUGUG-CCGUUU- -5'
6531 3' -59.2 NC_001847.1 + 133073 0.66 0.72345
Target:  5'- --cGGGGCGCUCGccgccaccGCUGCGgCGGCGc- -3'
miRNA:   3'- aguCUCCGCGGGC--------CGAUGU-GCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 53923 0.66 0.72345
Target:  5'- cCGGAGGCGa-CGGCg--ACGGCGGc -3'
miRNA:   3'- aGUCUCCGCggGCCGaugUGCCGUUu -5'
6531 3' -59.2 NC_001847.1 + 18179 0.66 0.72345
Target:  5'- cCAGcGG-GCCCauGGCggacGCGCGGCGAGg -3'
miRNA:   3'- aGUCuCCgCGGG--CCGa---UGUGCCGUUU- -5'
6531 3' -59.2 NC_001847.1 + 52001 0.66 0.72345
Target:  5'- gCGGAcGCGCCCGaCgcCGCGGCGGc -3'
miRNA:   3'- aGUCUcCGCGGGCcGauGUGCCGUUu -5'
6531 3' -59.2 NC_001847.1 + 72765 0.66 0.72345
Target:  5'- -aAGAcGCGUCgGGCgGCGCGGCGu- -3'
miRNA:   3'- agUCUcCGCGGgCCGaUGUGCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 55265 0.66 0.72345
Target:  5'- gCGGAccgaacGGCGCCgGGCccggACggGCGGCAGu -3'
miRNA:   3'- aGUCU------CCGCGGgCCGa---UG--UGCCGUUu -5'
6531 3' -59.2 NC_001847.1 + 87581 0.66 0.722459
Target:  5'- --cGAGGUGCCCGuGCUcaccgagGC-CGGCGc- -3'
miRNA:   3'- aguCUCCGCGGGC-CGA-------UGuGCCGUuu -5'
6531 3' -59.2 NC_001847.1 + 60932 0.66 0.716493
Target:  5'- gCAGAGGUcaaagggGCCCGuGUUuugcaggaaggcgccGCGCGGCAu- -3'
miRNA:   3'- aGUCUCCG-------CGGGC-CGA---------------UGUGCCGUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.