miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6531 5' -55.4 NC_001847.1 + 16053 0.66 0.907192
Target:  5'- cCGCUCUCGaucuUGUACCauaugaccgUGGCGUUGUa- -3'
miRNA:   3'- -GCGAGAGCc---GCAUGG---------ACUGCGACAaa -5'
6531 5' -55.4 NC_001847.1 + 33930 0.66 0.900812
Target:  5'- aGCcUUCGGCcgGUACCgcgaGGCGCUGg-- -3'
miRNA:   3'- gCGaGAGCCG--CAUGGa---CUGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 100061 0.66 0.894191
Target:  5'- aGCUCUCGaGUGauUGCCUGGCuGCUu--- -3'
miRNA:   3'- gCGAGAGC-CGC--AUGGACUG-CGAcaaa -5'
6531 5' -55.4 NC_001847.1 + 115153 0.66 0.894191
Target:  5'- uGCUCU-GGCGgggcGCCUGACuuucgGCUGg-- -3'
miRNA:   3'- gCGAGAgCCGCa---UGGACUG-----CGACaaa -5'
6531 5' -55.4 NC_001847.1 + 69392 0.66 0.887331
Target:  5'- gCGCUgC-CGGCGgccuuugcggGCCcGGCGCUGUUc -3'
miRNA:   3'- -GCGA-GaGCCGCa---------UGGaCUGCGACAAa -5'
6531 5' -55.4 NC_001847.1 + 108746 0.66 0.887331
Target:  5'- aCGCga-CGGCGUuCCUGccGCGCUGg-- -3'
miRNA:   3'- -GCGagaGCCGCAuGGAC--UGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 30176 0.67 0.8576
Target:  5'- gGCgCUCGGCGgACCUggccGACGCgGUg- -3'
miRNA:   3'- gCGaGAGCCGCaUGGA----CUGCGaCAaa -5'
6531 5' -55.4 NC_001847.1 + 31089 0.67 0.852839
Target:  5'- cCGCUgCggcCGGUGUACCUGgccugcgggcggcgcGCGCUGg-- -3'
miRNA:   3'- -GCGA-Ga--GCCGCAUGGAC---------------UGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 133902 0.67 0.852839
Target:  5'- cCGCUgCggcCGGUGUACCUGgccugcgggcggcgcGCGCUGg-- -3'
miRNA:   3'- -GCGA-Ga--GCCGCAUGGAC---------------UGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 29310 0.68 0.815737
Target:  5'- aGCUgCUCGGCGcgGCCcgcGACGCgGUg- -3'
miRNA:   3'- gCGA-GAGCCGCa-UGGa--CUGCGaCAaa -5'
6531 5' -55.4 NC_001847.1 + 132123 0.68 0.815737
Target:  5'- aGCUgCUCGGCGcgGCCcgcGACGCgGUg- -3'
miRNA:   3'- gCGA-GAGCCGCa-UGGa--CUGCGaCAaa -5'
6531 5' -55.4 NC_001847.1 + 29631 0.68 0.815737
Target:  5'- uGCUgUCGGaCGUGCUgGugGCUGc-- -3'
miRNA:   3'- gCGAgAGCC-GCAUGGaCugCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 56671 0.68 0.806811
Target:  5'- uGCUgUCGGgcagcuuggagaCGUACCUGGCGCg---- -3'
miRNA:   3'- gCGAgAGCC------------GCAUGGACUGCGacaaa -5'
6531 5' -55.4 NC_001847.1 + 116116 0.68 0.797721
Target:  5'- uGCuUCUCGGCcuuucgGCCgGGCGCUGg-- -3'
miRNA:   3'- gCG-AGAGCCGca----UGGaCUGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 91772 0.68 0.797721
Target:  5'- gCGCUCcgUCGGCGgcgcugGCCgcgGACGCUu--- -3'
miRNA:   3'- -GCGAG--AGCCGCa-----UGGa--CUGCGAcaaa -5'
6531 5' -55.4 NC_001847.1 + 70261 0.68 0.788476
Target:  5'- cCGCUCUCGcUGUACCgcgagGACGCg---- -3'
miRNA:   3'- -GCGAGAGCcGCAUGGa----CUGCGacaaa -5'
6531 5' -55.4 NC_001847.1 + 83655 0.68 0.788476
Target:  5'- gCGCUgCUCcgaguuugacuGGCGccACCUGGCGCUGa-- -3'
miRNA:   3'- -GCGA-GAG-----------CCGCa-UGGACUGCGACaaa -5'
6531 5' -55.4 NC_001847.1 + 133295 0.68 0.779084
Target:  5'- gCGCUC-CGGCGcagagUGCgUGcCGCUGUUg -3'
miRNA:   3'- -GCGAGaGCCGC-----AUGgACuGCGACAAa -5'
6531 5' -55.4 NC_001847.1 + 38591 0.69 0.766671
Target:  5'- gGCUCcUGGCGUugagcgcgcgcgucGCCUGACGCgccGUa- -3'
miRNA:   3'- gCGAGaGCCGCA--------------UGGACUGCGa--CAaa -5'
6531 5' -55.4 NC_001847.1 + 14462 0.69 0.754048
Target:  5'- gCGCUgCUCGGCGUGcgcuccaacgccgucCCggaGGCGCUGg-- -3'
miRNA:   3'- -GCGA-GAGCCGCAU---------------GGa--CUGCGACaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.