miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6532 3' -59.8 NC_001847.1 + 28765 0.66 0.753273
Target:  5'- aCCUGCAGCuGGCGcGCCUgCUGCa---- -3'
miRNA:   3'- -GGGUGUCG-CCGC-CGGAaGGCGcuuca -5'
6532 3' -59.8 NC_001847.1 + 31572 0.66 0.753273
Target:  5'- gCCgGCGGCGGgcCGGCCUcgcCCuaGggGg -3'
miRNA:   3'- -GGgUGUCGCC--GCCGGAa--GGcgCuuCa -5'
6532 3' -59.8 NC_001847.1 + 67174 0.66 0.753273
Target:  5'- cCCCGCucucGGCGGCGacccCCUgCCGCGGc-- -3'
miRNA:   3'- -GGGUG----UCGCCGCc---GGAaGGCGCUuca -5'
6532 3' -59.8 NC_001847.1 + 112850 0.66 0.753273
Target:  5'- cCCCAuCAGCGuGuCGGCCU-CgGCGgcGc -3'
miRNA:   3'- -GGGU-GUCGC-C-GCCGGAaGgCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 1406 0.66 0.753273
Target:  5'- aCUCGC-GCGGCGGCaCgggcaCCGCGGu-- -3'
miRNA:   3'- -GGGUGuCGCCGCCG-Gaa---GGCGCUuca -5'
6532 3' -59.8 NC_001847.1 + 30405 0.66 0.753273
Target:  5'- gCCCG-AGUGGCcGCCgcgCCGCGgcGg -3'
miRNA:   3'- -GGGUgUCGCCGcCGGaa-GGCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 12763 0.66 0.753273
Target:  5'- gCgCGCAGuCGcCGGCCgUCCGCagGAAGUa -3'
miRNA:   3'- -GgGUGUC-GCcGCCGGaAGGCG--CUUCA- -5'
6532 3' -59.8 NC_001847.1 + 73183 0.66 0.753273
Target:  5'- -aCGCGGCGGCGGaguCggcCCGCGcGGg -3'
miRNA:   3'- ggGUGUCGCCGCCg--Gaa-GGCGCuUCa -5'
6532 3' -59.8 NC_001847.1 + 6959 0.66 0.753272
Target:  5'- -gCGCGgggucGCGGCGGCgCUUCCGCc---- -3'
miRNA:   3'- ggGUGU-----CGCCGCCG-GAAGGCGcuuca -5'
6532 3' -59.8 NC_001847.1 + 134385 0.66 0.753272
Target:  5'- gCCgGCGGCGGgcCGGCCUcgcCCuaGggGg -3'
miRNA:   3'- -GGgUGUCGCC--GCCGGAa--GGcgCuuCa -5'
6532 3' -59.8 NC_001847.1 + 96861 0.66 0.753272
Target:  5'- gCgGCGGUgGGCGGCggUCCGCGcuGGGg -3'
miRNA:   3'- gGgUGUCG-CCGCCGgaAGGCGC--UUCa -5'
6532 3' -59.8 NC_001847.1 + 104219 0.66 0.753272
Target:  5'- aCUCGC-GCGGCGGCaCgggcaCCGCGGu-- -3'
miRNA:   3'- -GGGUGuCGCCGCCG-Gaa---GGCGCUuca -5'
6532 3' -59.8 NC_001847.1 + 53357 0.66 0.753272
Target:  5'- aCgCGCuGCuGGCGGCCgcgggcaCCGCGAGc- -3'
miRNA:   3'- -GgGUGuCG-CCGCCGGaa-----GGCGCUUca -5'
6532 3' -59.8 NC_001847.1 + 91668 0.66 0.753272
Target:  5'- uCUCGCGGCuGCGGCUgcggCUGCGGc-- -3'
miRNA:   3'- -GGGUGUCGcCGCCGGaa--GGCGCUuca -5'
6532 3' -59.8 NC_001847.1 + 96284 0.66 0.753272
Target:  5'- cCCCACugcgAGCaGGUGGUgUgugagugcgCCGCGggGg -3'
miRNA:   3'- -GGGUG----UCG-CCGCCGgAa--------GGCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 32011 0.66 0.753272
Target:  5'- uUCGCGcGcCGGCGGCCcgcgcUCgCGCGggGa -3'
miRNA:   3'- gGGUGU-C-GCCGCCGGa----AG-GCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 131578 0.66 0.753272
Target:  5'- aCCUGCAGCuGGCGcGCCUgCUGCa---- -3'
miRNA:   3'- -GGGUGUCG-CCGC-CGGAaGGCGcuuca -5'
6532 3' -59.8 NC_001847.1 + 133218 0.66 0.753272
Target:  5'- gCCCG-AGUGGCcGCCgcgCCGCGgcGg -3'
miRNA:   3'- -GGGUgUCGCCGcCGGaa-GGCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 2254 0.66 0.750447
Target:  5'- uCCCAgGugacGCGGCGGCCcUcgggaacgaauugcUCCGCGccaAAGUc -3'
miRNA:   3'- -GGGUgU----CGCCGCCGG-A--------------AGGCGC---UUCA- -5'
6532 3' -59.8 NC_001847.1 + 102090 0.66 0.74477
Target:  5'- gCCGCAGCGccuCGGCCgcgagcgcguccagcUCgGCGGAGa -3'
miRNA:   3'- gGGUGUCGCc--GCCGGa--------------AGgCGCUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.