miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6532 3' -59.8 NC_001847.1 + 34050 0.66 0.714935
Target:  5'- cCCCGCGGCGcGCGcGUUUUUcgaggggcaCGCGGAGc -3'
miRNA:   3'- -GGGUGUCGC-CGC-CGGAAG---------GCGCUUCa -5'
6532 3' -59.8 NC_001847.1 + 94161 0.66 0.70516
Target:  5'- uCUCGCGGCGGCugcugggcgcGGCCgccUCgCGCGGgcAGUu -3'
miRNA:   3'- -GGGUGUCGCCG----------CCGGa--AG-GCGCU--UCA- -5'
6532 3' -59.8 NC_001847.1 + 4466 0.66 0.734274
Target:  5'- gCCgCGCGGUugacGGCGGCCUUgCGCu---- -3'
miRNA:   3'- -GG-GUGUCG----CCGCCGGAAgGCGcuuca -5'
6532 3' -59.8 NC_001847.1 + 59345 0.66 0.709078
Target:  5'- gCCCggcaucgggggcggaGCGGCGGCGGCag-CgGCGgcGg -3'
miRNA:   3'- -GGG---------------UGUCGCCGCCGgaaGgCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 104540 0.66 0.724642
Target:  5'- gCCGCcGCGccGCGGCCagCCGCgcgcaGAGGUa -3'
miRNA:   3'- gGGUGuCGC--CGCCGGaaGGCG-----CUUCA- -5'
6532 3' -59.8 NC_001847.1 + 96920 0.66 0.70516
Target:  5'- gCCGCguagaGGCGcGCGGCCcgggccUCCGCGGGc- -3'
miRNA:   3'- gGGUG-----UCGC-CGCCGGa-----AGGCGCUUca -5'
6532 3' -59.8 NC_001847.1 + 28004 0.66 0.734274
Target:  5'- gCUGCAGCGcGCGGCgUgCCGCGc--- -3'
miRNA:   3'- gGGUGUCGC-CGCCGgAaGGCGCuuca -5'
6532 3' -59.8 NC_001847.1 + 8131 0.66 0.70516
Target:  5'- gCCC-CAGgGGCGGgCggugcUgCGCGAGGg -3'
miRNA:   3'- -GGGuGUCgCCGCCgGa----AgGCGCUUCa -5'
6532 3' -59.8 NC_001847.1 + 4417 0.66 0.724642
Target:  5'- gCCgACGGCGGCGaGCgCgcgCCGCaGGGa -3'
miRNA:   3'- -GGgUGUCGCCGC-CG-Gaa-GGCGcUUCa -5'
6532 3' -59.8 NC_001847.1 + 53102 0.66 0.70516
Target:  5'- -gCGgGGCGGCGGCCcgCCaGCGGc-- -3'
miRNA:   3'- ggGUgUCGCCGCCGGaaGG-CGCUuca -5'
6532 3' -59.8 NC_001847.1 + 132341 0.66 0.70516
Target:  5'- -gCGCGGCuGGCGGCCgcgCuCGCGGc-- -3'
miRNA:   3'- ggGUGUCG-CCGCCGGaa-G-GCGCUuca -5'
6532 3' -59.8 NC_001847.1 + 36993 0.66 0.714935
Target:  5'- gCCCGCgccgAGCGGCGGCggcgcgcucgagCUgacgcCCGCGGAc- -3'
miRNA:   3'- -GGGUG----UCGCCGCCG------------GAa----GGCGCUUca -5'
6532 3' -59.8 NC_001847.1 + 110904 0.66 0.712009
Target:  5'- aCCACGGCGaggcgccgacccacGUGGCCccguacaaCCGCGggGc -3'
miRNA:   3'- gGGUGUCGC--------------CGCCGGaa------GGCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 48270 0.66 0.70516
Target:  5'- cCCCGCAGgcuaggucgaCGGCGGCCUUCUcCa---- -3'
miRNA:   3'- -GGGUGUC----------GCCGCCGGAAGGcGcuuca -5'
6532 3' -59.8 NC_001847.1 + 132178 0.66 0.724642
Target:  5'- cCCgGCGGCgcugcgcgccgaGGCGGCCg-CCGCGcugGAGg -3'
miRNA:   3'- -GGgUGUCG------------CCGCCGGaaGGCGC---UUCa -5'
6532 3' -59.8 NC_001847.1 + 112850 0.66 0.753273
Target:  5'- cCCCAuCAGCGuGuCGGCCU-CgGCGgcGc -3'
miRNA:   3'- -GGGU-GUCGC-C-GCCGGAaGgCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 103810 0.66 0.733314
Target:  5'- gCCgGCGGCGGCacgcgcuccaccaGGCCgccgcCCGCGgcGc -3'
miRNA:   3'- -GGgUGUCGCCG-------------CCGGaa---GGCGCuuCa -5'
6532 3' -59.8 NC_001847.1 + 11058 0.66 0.714935
Target:  5'- gCCGCAGCGGCGGCaguucacCUGCc---- -3'
miRNA:   3'- gGGUGUCGCCGCCGgaa----GGCGcuuca -5'
6532 3' -59.8 NC_001847.1 + 62149 0.66 0.734274
Target:  5'- gCCCGC-GCuGCGGCCagcucCCGCGcGGg -3'
miRNA:   3'- -GGGUGuCGcCGCCGGaa---GGCGCuUCa -5'
6532 3' -59.8 NC_001847.1 + 92421 0.66 0.724642
Target:  5'- gCCCGC-GCGGCcGCCcgCCGCGc--- -3'
miRNA:   3'- -GGGUGuCGCCGcCGGaaGGCGCuuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.