miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6532 5' -59.2 NC_001847.1 + 31886 0.66 0.747253
Target:  5'- cGGAgCCCGU-CGcGCGGaUGCCGCc- -3'
miRNA:   3'- -UCUaGGGCAuGCuCGCCgACGGCGau -5'
6532 5' -59.2 NC_001847.1 + 115105 0.66 0.747253
Target:  5'- ---gCCCGcGCccaGGGCGGCgGCCGCa- -3'
miRNA:   3'- ucuaGGGCaUG---CUCGCCGaCGGCGau -5'
6532 5' -59.2 NC_001847.1 + 34914 0.66 0.747253
Target:  5'- gGGGUCUCGccaGCGAGaGaGCUGCUGCg- -3'
miRNA:   3'- -UCUAGGGCa--UGCUCgC-CGACGGCGau -5'
6532 5' -59.2 NC_001847.1 + 58746 0.66 0.747253
Target:  5'- cGG-CCCGacaGCG-GCGGCgGCCGCg- -3'
miRNA:   3'- uCUaGGGCa--UGCuCGCCGaCGGCGau -5'
6532 5' -59.2 NC_001847.1 + 98550 0.66 0.737566
Target:  5'- ---aCCCGguaGCaGAGCGGCgUGCCGUc- -3'
miRNA:   3'- ucuaGGGCa--UG-CUCGCCG-ACGGCGau -5'
6532 5' -59.2 NC_001847.1 + 60740 0.66 0.737566
Target:  5'- cGG-CCCGcgcGCGcGCGGCgGCCGCg- -3'
miRNA:   3'- uCUaGGGCa--UGCuCGCCGaCGGCGau -5'
6532 5' -59.2 NC_001847.1 + 121611 0.66 0.737566
Target:  5'- ---cCCCGgcgGCG-GuuGCUGCCGCUGc -3'
miRNA:   3'- ucuaGGGCa--UGCuCgcCGACGGCGAU- -5'
6532 5' -59.2 NC_001847.1 + 52006 0.66 0.737566
Target:  5'- cGcgCCCG-ACGccGCGGCgGCCGCc- -3'
miRNA:   3'- uCuaGGGCaUGCu-CGCCGaCGGCGau -5'
6532 5' -59.2 NC_001847.1 + 98866 0.66 0.737566
Target:  5'- cAGAUCCCGgaaggGCGcgugcgccugGGCGGCccagGCCGg-- -3'
miRNA:   3'- -UCUAGGGCa----UGC----------UCGCCGa---CGGCgau -5'
6532 5' -59.2 NC_001847.1 + 30590 0.66 0.727787
Target:  5'- uGGAguaCCUcUGCGcGCGGCUGgCCGCg- -3'
miRNA:   3'- -UCUa--GGGcAUGCuCGCCGAC-GGCGau -5'
6532 5' -59.2 NC_001847.1 + 54039 0.66 0.727787
Target:  5'- uGGAugUCCuCGUcgGCGcGCGGCgagGCCGCc- -3'
miRNA:   3'- -UCU--AGG-GCA--UGCuCGCCGa--CGGCGau -5'
6532 5' -59.2 NC_001847.1 + 99092 0.66 0.727787
Target:  5'- uGGggCCUGUcuGCGAGCaauaaGUUGCCGCg- -3'
miRNA:   3'- -UCuaGGGCA--UGCUCGc----CGACGGCGau -5'
6532 5' -59.2 NC_001847.1 + 77925 0.66 0.727787
Target:  5'- aGGAgaCCG-GCGGGCGGCUGuaGCa- -3'
miRNA:   3'- -UCUagGGCaUGCUCGCCGACggCGau -5'
6532 5' -59.2 NC_001847.1 + 59982 0.66 0.727787
Target:  5'- uGGUCCCG-ACGcGGCGGCcuaGCaCGCa- -3'
miRNA:   3'- uCUAGGGCaUGC-UCGCCGa--CG-GCGau -5'
6532 5' -59.2 NC_001847.1 + 77606 0.66 0.727787
Target:  5'- ---aCCCGUuuCuGGCGGC-GCCGCUGg -3'
miRNA:   3'- ucuaGGGCAu-GcUCGCCGaCGGCGAU- -5'
6532 5' -59.2 NC_001847.1 + 133403 0.66 0.727787
Target:  5'- uGGAguaCCUcUGCGcGCGGCUGgCCGCg- -3'
miRNA:   3'- -UCUa--GGGcAUGCuCGCCGAC-GGCGau -5'
6532 5' -59.2 NC_001847.1 + 115200 0.66 0.717926
Target:  5'- gGGAUUCCG-----GCGGCUGCUGCa- -3'
miRNA:   3'- -UCUAGGGCaugcuCGCCGACGGCGau -5'
6532 5' -59.2 NC_001847.1 + 112103 0.66 0.717926
Target:  5'- aAGGUggaCUGgcuCGAGCGGCgcgugGCCGCg- -3'
miRNA:   3'- -UCUAg--GGCau-GCUCGCCGa----CGGCGau -5'
6532 5' -59.2 NC_001847.1 + 51416 0.66 0.717926
Target:  5'- uAGcgCCCGagUGAGCGGCggGCuCGUUAa -3'
miRNA:   3'- -UCuaGGGCauGCUCGCCGa-CG-GCGAU- -5'
6532 5' -59.2 NC_001847.1 + 83702 0.66 0.717926
Target:  5'- gAGAugUCgCCGUccaugucgcgcGCGGGCGGCUccgucugcgccGCCGCa- -3'
miRNA:   3'- -UCU--AG-GGCA-----------UGCUCGCCGA-----------CGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.