miRNA display CGI


Results 1 - 20 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6533 3' -66.4 NC_001847.1 + 53860 0.65 0.449141
Target:  5'- gCGgCgCUGG-CGGCGccgaccgccgcgggGGCGGCGGGc -3'
miRNA:   3'- gGCgGgGACCgGCCGU--------------UCGCCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 49718 0.66 0.443151
Target:  5'- gCGCCCgUGcaagugggcGCCGGCgAGGCGGUGcGcGUg -3'
miRNA:   3'- gGCGGGgAC---------CGGCCG-UUCGCCGC-C-CA- -5'
6533 3' -66.4 NC_001847.1 + 132362 0.66 0.443151
Target:  5'- gCGgCCCUGGa-GGCcgcCGGCGGGg -3'
miRNA:   3'- gGCgGGGACCggCCGuucGCCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 78333 0.66 0.443151
Target:  5'- gCGCCCCcaggcGcGCCGGCcccguGAGCgcgacgaacGGCGGGc -3'
miRNA:   3'- gGCGGGGa----C-CGGCCG-----UUCG---------CCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 41812 0.66 0.443151
Target:  5'- aCGCaCC-GcGCgGGCGGGCGGCGcGGg -3'
miRNA:   3'- gGCGgGGaC-CGgCCGUUCGCCGC-CCa -5'
6533 3' -66.4 NC_001847.1 + 54577 0.66 0.443151
Target:  5'- aCgGCCCCgcgGGCugggCGGCGcuGGCGGCGc-- -3'
miRNA:   3'- -GgCGGGGa--CCG----GCCGU--UCGCCGCcca -5'
6533 3' -66.4 NC_001847.1 + 108477 0.66 0.443151
Target:  5'- cCCGCCCa-GGCgcgaaGGUggGCcGGcCGGGg -3'
miRNA:   3'- -GGCGGGgaCCGg----CCGuuCG-CC-GCCCa -5'
6533 3' -66.4 NC_001847.1 + 5664 0.66 0.443151
Target:  5'- cCCGCCCa-GGCgcgaaGGUggGCcGGcCGGGg -3'
miRNA:   3'- -GGCGGGgaCCGg----CCGuuCG-CC-GCCCa -5'
6533 3' -66.4 NC_001847.1 + 29549 0.66 0.443151
Target:  5'- gCGgCCCUGGa-GGCcgcCGGCGGGg -3'
miRNA:   3'- gGCgGGGACCggCCGuucGCCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 74298 0.66 0.443151
Target:  5'- aCGCCCUgGcGCCGcGCAGcGCcGCGGGc -3'
miRNA:   3'- gGCGGGGaC-CGGC-CGUU-CGcCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 47612 0.66 0.442299
Target:  5'- cCCGCgaauacuUCCaGGCuuuCGGC-GGCGGCGGGc -3'
miRNA:   3'- -GGCG-------GGGaCCG---GCCGuUCGCCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 3788 0.66 0.438052
Target:  5'- cCCGCgCCgccgaagcgcacgcGGCCGGgcGGCGGCGGc- -3'
miRNA:   3'- -GGCGgGGa-------------CCGGCCguUCGCCGCCca -5'
6533 3' -66.4 NC_001847.1 + 106601 0.66 0.438052
Target:  5'- cCCGCgCCgccgaagcgcacgcGGCCGGgcGGCGGCGGc- -3'
miRNA:   3'- -GGCGgGGa-------------CCGGCCguUCGCCGCCca -5'
6533 3' -66.4 NC_001847.1 + 53580 0.66 0.438052
Target:  5'- gCCgGCCCCgcgcagcugcgcggGGCCGGCGAGCucGGCc--- -3'
miRNA:   3'- -GG-CGGGGa-------------CCGGCCGUUCG--CCGccca -5'
6533 3' -66.4 NC_001847.1 + 69085 0.66 0.434672
Target:  5'- gCCGCgUCUGGCgCcGCGcGCGGaCGGGc -3'
miRNA:   3'- -GGCGgGGACCG-GcCGUuCGCC-GCCCa -5'
6533 3' -66.4 NC_001847.1 + 56889 0.66 0.434672
Target:  5'- -gGCCCgCcGGCgaCGGCGacgccGGCgGGCGGGUg -3'
miRNA:   3'- ggCGGG-GaCCG--GCCGU-----UCG-CCGCCCA- -5'
6533 3' -66.4 NC_001847.1 + 77099 0.66 0.434672
Target:  5'- gCGgCCC-GcGCgCGGU-AGCGGCGGGg -3'
miRNA:   3'- gGCgGGGaC-CG-GCCGuUCGCCGCCCa -5'
6533 3' -66.4 NC_001847.1 + 99735 0.66 0.434672
Target:  5'- gCGCCUCguaggccGaGCCGGCaAAGCGaGCGuGGUc -3'
miRNA:   3'- gGCGGGGa------C-CGGCCG-UUCGC-CGC-CCA- -5'
6533 3' -66.4 NC_001847.1 + 93621 0.66 0.434672
Target:  5'- gUGCUCC-GGCCGGCGcGGCcGCGGa- -3'
miRNA:   3'- gGCGGGGaCCGGCCGU-UCGcCGCCca -5'
6533 3' -66.4 NC_001847.1 + 119742 0.66 0.434672
Target:  5'- gCGCUCCagGGCCGcCcAGUGGCGGa- -3'
miRNA:   3'- gGCGGGGa-CCGGCcGuUCGCCGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.