miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 3' -53.9 NC_001847.1 + 55985 0.66 0.921294
Target:  5'- gCGCUGCCUuucgaaaGCcgAGUACCUGCgCAGCGg -3'
miRNA:   3'- -GUGGUGGA-------CG--UCAUGGACGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 121134 0.68 0.834461
Target:  5'- cCGCCGCCUGC--UGCCgUGCUCucGGCGc -3'
miRNA:   3'- -GUGGUGGACGucAUGG-ACGAG--UUGUa -5'
6535 3' -53.9 NC_001847.1 + 85315 0.68 0.843015
Target:  5'- gGCCGCCUGCAGcguccagGCC-GC-CAGCGc -3'
miRNA:   3'- gUGGUGGACGUCa------UGGaCGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 97776 0.68 0.85136
Target:  5'- gGCCGCCaGCAGagagaggACCgGCUCGACc- -3'
miRNA:   3'- gUGGUGGaCGUCa------UGGaCGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 12978 0.67 0.867392
Target:  5'- gGCCAUggcgCUGCAGUACCgGCUgGGgGUg -3'
miRNA:   3'- gUGGUG----GACGUCAUGGaCGAgUUgUA- -5'
6535 3' -53.9 NC_001847.1 + 70888 0.67 0.889694
Target:  5'- aACCGCCUGCGG-ACC-GCUacucgCGGCAc -3'
miRNA:   3'- gUGGUGGACGUCaUGGaCGA-----GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 4317 0.66 0.909772
Target:  5'- gCGCCGCCUGCGGguagUGCUCcGCc- -3'
miRNA:   3'- -GUGGUGGACGUCauggACGAGuUGua -5'
6535 3' -53.9 NC_001847.1 + 133666 0.66 0.909772
Target:  5'- gCGCCGCCgcUGCGGcucUGCCgcgGCggCAACGUg -3'
miRNA:   3'- -GUGGUGG--ACGUC---AUGGa--CGa-GUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 39242 0.66 0.915953
Target:  5'- cCACCACCgucagGCGGUGCgCUugGCUCGc--- -3'
miRNA:   3'- -GUGGUGGa----CGUCAUG-GA--CGAGUugua -5'
6535 3' -53.9 NC_001847.1 + 17711 0.68 0.834461
Target:  5'- aCGCCGCagUGCAcGUACagcgGCUCGGCGUa -3'
miRNA:   3'- -GUGGUGg-ACGU-CAUGga--CGAGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 44998 0.68 0.825706
Target:  5'- cCAuCCACCUGCAccaccGCCUGCUgGACc- -3'
miRNA:   3'- -GU-GGUGGACGUca---UGGACGAgUUGua -5'
6535 3' -53.9 NC_001847.1 + 90029 0.69 0.816758
Target:  5'- gCugCACCUGCGcuucgaggGCCUGUUCAcGCAUg -3'
miRNA:   3'- -GugGUGGACGUca------UGGACGAGU-UGUA- -5'
6535 3' -53.9 NC_001847.1 + 10821 0.72 0.644835
Target:  5'- gCGCgCugCUGCAGcACCUGCgcgCGACGg -3'
miRNA:   3'- -GUG-GugGACGUCaUGGACGa--GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 82962 0.71 0.675749
Target:  5'- gGCCGCCUGCgaucuguGGUGgCUGCUcCGGCGg -3'
miRNA:   3'- gUGGUGGACG-------UCAUgGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 131571 0.7 0.739405
Target:  5'- gGCCcggACCUGCAGcuggcgcGCCUGCUgCAGCGg -3'
miRNA:   3'- gUGG---UGGACGUCa------UGGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 2647 0.7 0.749541
Target:  5'- uCGCCGCUUGCGGcGCCUucgcccggcgGCUCGGCc- -3'
miRNA:   3'- -GUGGUGGACGUCaUGGA----------CGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 73756 0.69 0.769465
Target:  5'- gGCCACUUugcGCAGUACCUGauccgCGACGc -3'
miRNA:   3'- gUGGUGGA---CGUCAUGGACga---GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 80347 0.69 0.807627
Target:  5'- gCGCCAgCUcGCAGUACCcGUgCAGCGUg -3'
miRNA:   3'- -GUGGUgGA-CGUCAUGGaCGaGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 57002 0.69 0.816758
Target:  5'- aGCCGCCUgGCcacguccuGGUGCCUGCUgCAgaACAa -3'
miRNA:   3'- gUGGUGGA-CG--------UCAUGGACGA-GU--UGUa -5'
6535 3' -53.9 NC_001847.1 + 66524 0.69 0.816758
Target:  5'- gCGCCGCCuUGCGGUccccgGCCcGCUgGACGc -3'
miRNA:   3'- -GUGGUGG-ACGUCA-----UGGaCGAgUUGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.