miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 3' -53.9 NC_001847.1 + 97776 0.68 0.85136
Target:  5'- gGCCGCCaGCAGagagaggACCgGCUCGACc- -3'
miRNA:   3'- gUGGUGGaCGUCa------UGGaCGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 85315 0.68 0.843015
Target:  5'- gGCCGCCUGCAGcguccagGCC-GC-CAGCGc -3'
miRNA:   3'- gUGGUGGACGUCa------UGGaCGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 121134 0.68 0.834461
Target:  5'- cCGCCGCCUGC--UGCCgUGCUCucGGCGc -3'
miRNA:   3'- -GUGGUGGACGucAUGG-ACGAG--UUGUa -5'
6535 3' -53.9 NC_001847.1 + 17711 0.68 0.834461
Target:  5'- aCGCCGCagUGCAcGUACagcgGCUCGGCGUa -3'
miRNA:   3'- -GUGGUGg-ACGU-CAUGga--CGAGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 127300 0.68 0.825706
Target:  5'- gCGCCACCgGCGGUGCCggagacacgGCgacCGGCGc -3'
miRNA:   3'- -GUGGUGGaCGUCAUGGa--------CGa--GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 44998 0.68 0.825706
Target:  5'- cCAuCCACCUGCAccaccGCCUGCUgGACc- -3'
miRNA:   3'- -GU-GGUGGACGUca---UGGACGAgUUGua -5'
6535 3' -53.9 NC_001847.1 + 90029 0.69 0.816758
Target:  5'- gCugCACCUGCGcuucgaggGCCUGUUCAcGCAUg -3'
miRNA:   3'- -GugGUGGACGUca------UGGACGAGU-UGUA- -5'
6535 3' -53.9 NC_001847.1 + 66524 0.69 0.816758
Target:  5'- gCGCCGCCuUGCGGUccccgGCCcGCUgGACGc -3'
miRNA:   3'- -GUGGUGG-ACGUCA-----UGGaCGAgUUGUa -5'
6535 3' -53.9 NC_001847.1 + 70298 0.69 0.816758
Target:  5'- gUACCAguCCUGCAGgggGCg-GCUCGGCAc -3'
miRNA:   3'- -GUGGU--GGACGUCa--UGgaCGAGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 57002 0.69 0.816758
Target:  5'- aGCCGCCUgGCcacguccuGGUGCCUGCUgCAgaACAa -3'
miRNA:   3'- gUGGUGGA-CG--------UCAUGGACGA-GU--UGUa -5'
6535 3' -53.9 NC_001847.1 + 80347 0.69 0.807627
Target:  5'- gCGCCAgCUcGCAGUACCcGUgCAGCGUg -3'
miRNA:   3'- -GUGGUgGA-CGUCAUGGaCGaGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 131081 0.69 0.807627
Target:  5'- aACCGCCU-CGGUACCgUGUUCAcCGUg -3'
miRNA:   3'- gUGGUGGAcGUCAUGG-ACGAGUuGUA- -5'
6535 3' -53.9 NC_001847.1 + 44060 0.69 0.806704
Target:  5'- gGCCGCCcuguucgUGCAgcugucGUGCCUGCUgCGGCGUc -3'
miRNA:   3'- gUGGUGG-------ACGU------CAUGGACGA-GUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 73756 0.69 0.769465
Target:  5'- gGCCACUUugcGCAGUACCUGauccgCGACGc -3'
miRNA:   3'- gUGGUGGA---CGUCAUGGACga---GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 70136 0.7 0.749541
Target:  5'- gCGCCGCUUGCGGU-CC-GCUCGcACAg -3'
miRNA:   3'- -GUGGUGGACGUCAuGGaCGAGU-UGUa -5'
6535 3' -53.9 NC_001847.1 + 2647 0.7 0.749541
Target:  5'- uCGCCGCUUGCGGcGCCUucgcccggcgGCUCGGCc- -3'
miRNA:   3'- -GUGGUGGACGUCaUGGA----------CGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 28758 0.7 0.739405
Target:  5'- gGCCcggACCUGCAGcuggcgcGCCUGCUgCAGCGg -3'
miRNA:   3'- gUGG---UGGACGUCa------UGGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 131571 0.7 0.739405
Target:  5'- gGCCcggACCUGCAGcuggcgcGCCUGCUgCAGCGg -3'
miRNA:   3'- gUGG---UGGACGUCa------UGGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 113296 0.7 0.729167
Target:  5'- gCACCACCUGCuGcACCgaGCgCAGCAUu -3'
miRNA:   3'- -GUGGUGGACGuCaUGGa-CGaGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 109968 0.71 0.697944
Target:  5'- gGCCAgCUGC--UACCUGCUCAAUc- -3'
miRNA:   3'- gUGGUgGACGucAUGGACGAGUUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.