miRNA display CGI


Results 21 - 40 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 96627 0.66 0.541316
Target:  5'- cGUGCGCggggGCcGGCggguacgcgucgUGCGCGgGGGCc -3'
miRNA:   3'- -CAUGCGga--CGaCCG------------ACGCGCgCCCGc -5'
6535 5' -63.2 NC_001847.1 + 37472 0.66 0.541316
Target:  5'- cGUugGCCgggcccgGcCUGGCaGCG-GCGGGUc -3'
miRNA:   3'- -CAugCGGa------C-GACCGaCGCgCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 75814 0.66 0.541316
Target:  5'- -gAUGCCggGCUGGUacgGCGCcGCcGGCGc -3'
miRNA:   3'- caUGCGGa-CGACCGa--CGCG-CGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 66054 0.66 0.541316
Target:  5'- -cACGUCgGC-GGCgGCGcCGgGGGCGa -3'
miRNA:   3'- caUGCGGaCGaCCGaCGC-GCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 74827 0.66 0.541316
Target:  5'- -cGCGCgaGCaGGUgGCGCGCGcGCGc -3'
miRNA:   3'- caUGCGgaCGaCCGaCGCGCGCcCGC- -5'
6535 5' -63.2 NC_001847.1 + 72769 0.66 0.541316
Target:  5'- -cGCGUCggGC-GGCgcgGCGUGCcuGGGCGa -3'
miRNA:   3'- caUGCGGa-CGaCCGa--CGCGCG--CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 110671 0.66 0.541316
Target:  5'- -aGCGucaaCCUGCcGcGCUGCGUGCgcgagggugaGGGCGg -3'
miRNA:   3'- caUGC----GGACGaC-CGACGCGCG----------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 53812 0.66 0.541316
Target:  5'- cUGCGCCccCUGGC-GCGC-CGGaGCGg -3'
miRNA:   3'- cAUGCGGacGACCGaCGCGcGCC-CGC- -5'
6535 5' -63.2 NC_001847.1 + 74505 0.66 0.541316
Target:  5'- -cGCGCCUGC--GCcGCGCGCuGGaCGa -3'
miRNA:   3'- caUGCGGACGacCGaCGCGCGcCC-GC- -5'
6535 5' -63.2 NC_001847.1 + 19342 0.66 0.541316
Target:  5'- -aGCGCCgcgGCcgGGUcuUGCGCGCGcccgacGGUGg -3'
miRNA:   3'- caUGCGGa--CGa-CCG--ACGCGCGC------CCGC- -5'
6535 5' -63.2 NC_001847.1 + 65946 0.66 0.541316
Target:  5'- -gACGCCcaggcGCUGGagcuCGCGCGGGaCGu -3'
miRNA:   3'- caUGCGGa----CGACCgac-GCGCGCCC-GC- -5'
6535 5' -63.2 NC_001847.1 + 83629 0.66 0.541316
Target:  5'- --cCGCCUGCcGGCgccGCaccgGCGCGGcGCu -3'
miRNA:   3'- cauGCGGACGaCCGa--CG----CGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 11342 0.66 0.540352
Target:  5'- -gGCGCCUGCc-GCUGCcgccgccGCGCaGGCc -3'
miRNA:   3'- caUGCGGACGacCGACG-------CGCGcCCGc -5'
6535 5' -63.2 NC_001847.1 + 133595 0.66 0.538424
Target:  5'- -cGCGCUaucggGCgggcgGGCUugggcggcacaagcGCGCGCGGGgGg -3'
miRNA:   3'- caUGCGGa----CGa----CCGA--------------CGCGCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 20993 0.66 0.532656
Target:  5'- -cGCGCCgcugcaUGCUGGUgcgaacucacgccgaGCGCGCGuGCGa -3'
miRNA:   3'- caUGCGG------ACGACCGa--------------CGCGCGCcCGC- -5'
6535 5' -63.2 NC_001847.1 + 116448 0.66 0.531697
Target:  5'- gGUGgGC--GCUGGCgcaCGCGCGGcGCGg -3'
miRNA:   3'- -CAUgCGgaCGACCGac-GCGCGCC-CGC- -5'
6535 5' -63.2 NC_001847.1 + 19240 0.66 0.531697
Target:  5'- -aGCGCCUGCgcgagccGGCcaaGCgGCGCGagccGGCGg -3'
miRNA:   3'- caUGCGGACGa------CCGa--CG-CGCGC----CCGC- -5'
6535 5' -63.2 NC_001847.1 + 10856 0.66 0.531697
Target:  5'- cGUG-GCCgagGCgcGGC-GgGCGCGGGCGc -3'
miRNA:   3'- -CAUgCGGa--CGa-CCGaCgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 56260 0.66 0.531697
Target:  5'- uGU-CGCCcuuuuacgGGCUGCGCGaGGGCGc -3'
miRNA:   3'- -CAuGCGGacga----CCGACGCGCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 88547 0.66 0.531697
Target:  5'- uGUGCGCgUgGCgugaccGcGCUcGCGCGCGGcGCGa -3'
miRNA:   3'- -CAUGCGgA-CGa-----C-CGA-CGCGCGCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.