miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6538 3' -62.2 NC_001847.1 + 54083 0.66 0.658642
Target:  5'- cGCcGCCuUCGcCGgcaaccuagaggcgcUCGCCGCGCG-GGAg -3'
miRNA:   3'- -UGcCGG-AGCaGC---------------AGCGGCGCGCaCCU- -5'
6538 3' -62.2 NC_001847.1 + 110097 0.66 0.65473
Target:  5'- gGCGGUCUCG-CG-CGaCUGCaaGCGUGGc -3'
miRNA:   3'- -UGCCGGAGCaGCaGC-GGCG--CGCACCu -5'
6538 3' -62.2 NC_001847.1 + 78653 0.66 0.65473
Target:  5'- cGCGGUCgcgcgCGccugCGUCGCCG-GCGUGc- -3'
miRNA:   3'- -UGCCGGa----GCa---GCAGCGGCgCGCACcu -5'
6538 3' -62.2 NC_001847.1 + 5895 0.66 0.65473
Target:  5'- gGCGGCCgCGcCGUCGCagauuGUGCGcccGGGc -3'
miRNA:   3'- -UGCCGGaGCaGCAGCGg----CGCGCa--CCU- -5'
6538 3' -62.2 NC_001847.1 + 76519 0.66 0.65473
Target:  5'- cGCGGCCUaCGUCccCGCgGgCGCGcUGGc -3'
miRNA:   3'- -UGCCGGA-GCAGcaGCGgC-GCGC-ACCu -5'
6538 3' -62.2 NC_001847.1 + 103183 0.66 0.65473
Target:  5'- -gGGCC-CGccccgCG-CGCCGCGCGccGGAc -3'
miRNA:   3'- ugCCGGaGCa----GCaGCGGCGCGCa-CCU- -5'
6538 3' -62.2 NC_001847.1 + 49912 0.66 0.65473
Target:  5'- cCGGCCgCGguggCGCUGCGCGUGc- -3'
miRNA:   3'- uGCCGGaGCagcaGCGGCGCGCACcu -5'
6538 3' -62.2 NC_001847.1 + 370 0.66 0.65473
Target:  5'- -gGGCC-CGccccgCG-CGCCGCGCGccGGAc -3'
miRNA:   3'- ugCCGGaGCa----GCaGCGGCGCGCa-CCU- -5'
6538 3' -62.2 NC_001847.1 + 54339 0.66 0.65473
Target:  5'- cGCGGCCU--UCGcCGCCGUaaagGCGUGu- -3'
miRNA:   3'- -UGCCGGAgcAGCaGCGGCG----CGCACcu -5'
6538 3' -62.2 NC_001847.1 + 119199 0.66 0.653752
Target:  5'- gAUGGCgagCUCGUCGgCGCCGCggccaccGCG-GGGc -3'
miRNA:   3'- -UGCCG---GAGCAGCaGCGGCG-------CGCaCCU- -5'
6538 3' -62.2 NC_001847.1 + 119139 0.66 0.653752
Target:  5'- gAUGGCgagCUCGUCGgCGCCGCggccgccGCG-GGGc -3'
miRNA:   3'- -UGCCG---GAGCAGCaGCGGCG-------CGCaCCU- -5'
6538 3' -62.2 NC_001847.1 + 86423 0.66 0.64592
Target:  5'- cGCcGCCUCGUCcuuccgcuucaucgCGCCGCGCugccUGGAc -3'
miRNA:   3'- -UGcCGGAGCAGca------------GCGGCGCGc---ACCU- -5'
6538 3' -62.2 NC_001847.1 + 31936 0.66 0.64592
Target:  5'- cCGGUCUCgGUCGgagcgcgguccggcgCGCgGCGCGcGGGg -3'
miRNA:   3'- uGCCGGAG-CAGCa--------------GCGgCGCGCaCCU- -5'
6538 3' -62.2 NC_001847.1 + 29140 0.66 0.64494
Target:  5'- gGCGGaCCgcugCGcCGUCGCCugccgcgagGCGC-UGGAg -3'
miRNA:   3'- -UGCC-GGa---GCaGCAGCGG---------CGCGcACCU- -5'
6538 3' -62.2 NC_001847.1 + 88244 0.66 0.64494
Target:  5'- -aGGCCggcgCGgcgCGgggCGCCGgGCGgGGAc -3'
miRNA:   3'- ugCCGGa---GCa--GCa--GCGGCgCGCaCCU- -5'
6538 3' -62.2 NC_001847.1 + 66351 0.66 0.64494
Target:  5'- uCGGCCcgcUCGcgCGgcCGCCGCgGCGaUGGAg -3'
miRNA:   3'- uGCCGG---AGCa-GCa-GCGGCG-CGC-ACCU- -5'
6538 3' -62.2 NC_001847.1 + 98433 0.66 0.64494
Target:  5'- cCGGCgCUCGUauUCGCgcaGCGCGUGu- -3'
miRNA:   3'- uGCCG-GAGCAgcAGCGg--CGCGCACcu -5'
6538 3' -62.2 NC_001847.1 + 131953 0.66 0.64494
Target:  5'- gGCGGaCCgcugCGcCGUCGCCugccgcgagGCGC-UGGAg -3'
miRNA:   3'- -UGCC-GGa---GCaGCAGCGG---------CGCGcACCU- -5'
6538 3' -62.2 NC_001847.1 + 113678 0.66 0.64396
Target:  5'- uGCcuCCUCGUCGUCGucggcugccgcguCCGCGUGcgGGAc -3'
miRNA:   3'- -UGccGGAGCAGCAGC-------------GGCGCGCa-CCU- -5'
6538 3' -62.2 NC_001847.1 + 116643 0.66 0.64396
Target:  5'- cUGGCCUCGgcagCcgcgggcacgcugGUgGCCuGCGUGUGGGu -3'
miRNA:   3'- uGCCGGAGCa---G-------------CAgCGG-CGCGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.