miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6545 3' -55.6 NC_001847.1 + 130789 0.66 0.915065
Target:  5'- -cGGUGGAGGCGGccGCGGCcgggGCGg -3'
miRNA:   3'- cuCUACCUCCGUC--UGCUGcagaCGCg -5'
6545 3' -55.6 NC_001847.1 + 8375 0.66 0.915065
Target:  5'- ----aGGGcgcGGCAgcGugGGCGUCUGcCGCg -3'
miRNA:   3'- cucuaCCU---CCGU--CugCUGCAGAC-GCG- -5'
6545 3' -55.6 NC_001847.1 + 111811 0.66 0.915065
Target:  5'- gGGGGUGGGGGCugGGugGGCGga-GCu- -3'
miRNA:   3'- -CUCUACCUCCG--UCugCUGCagaCGcg -5'
6545 3' -55.6 NC_001847.1 + 27976 0.66 0.915065
Target:  5'- -cGGUGGAGGCGGccGCGGCcgggGCGg -3'
miRNA:   3'- cuCUACCUCCGUC--UGCUGcagaCGCg -5'
6545 3' -55.6 NC_001847.1 + 86375 0.66 0.915065
Target:  5'- cGAGgcGGcGGGCcgcGGCGGCGg--GCGCg -3'
miRNA:   3'- -CUCuaCC-UCCGu--CUGCUGCagaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 30933 0.66 0.915065
Target:  5'- -cGgcGGAGGCcuucgcauaaACGGCG-CUGCGCg -3'
miRNA:   3'- cuCuaCCUCCGuc--------UGCUGCaGACGCG- -5'
6545 3' -55.6 NC_001847.1 + 76878 0.66 0.915065
Target:  5'- cGAGcacAUGGAGGCcugccugacGGAgGGCGgUC-GCGCg -3'
miRNA:   3'- -CUC---UACCUCCG---------UCUgCUGC-AGaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 74248 0.66 0.911492
Target:  5'- cGAGGUGGAGGUcacgcaacucuucccGGGCG-CGgccgccCUcGCGCu -3'
miRNA:   3'- -CUCUACCUCCG---------------UCUGCuGCa-----GA-CGCG- -5'
6545 3' -55.6 NC_001847.1 + 53709 0.66 0.909062
Target:  5'- cGAGucuGUGGGccGGCGGcUGGCG-CUGUGCg -3'
miRNA:   3'- -CUC---UACCU--CCGUCuGCUGCaGACGCG- -5'
6545 3' -55.6 NC_001847.1 + 128108 0.66 0.909062
Target:  5'- cGGGGUGGGaagcuGCGGugGuCGUCcacagggGCGCg -3'
miRNA:   3'- -CUCUACCUc----CGUCugCuGCAGa------CGCG- -5'
6545 3' -55.6 NC_001847.1 + 73091 0.66 0.909062
Target:  5'- ----gGGAcGCGGACGGCuUCgUGCGCa -3'
miRNA:   3'- cucuaCCUcCGUCUGCUGcAG-ACGCG- -5'
6545 3' -55.6 NC_001847.1 + 132433 0.66 0.909062
Target:  5'- gGAGGUGGAGGaCAuGAgGGCcgggGCGCc -3'
miRNA:   3'- -CUCUACCUCC-GU-CUgCUGcagaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 29620 0.66 0.909062
Target:  5'- gGAGGUGGAGGaCAuGAgGGCcgggGCGCc -3'
miRNA:   3'- -CUCUACCUCC-GU-CUgCUGcagaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 25295 0.66 0.909062
Target:  5'- cGGGGUGGGaagcuGCGGugGuCGUCcacagggGCGCg -3'
miRNA:   3'- -CUCUACCUc----CGUCugCuGCAGa------CGCG- -5'
6545 3' -55.6 NC_001847.1 + 74699 0.66 0.909062
Target:  5'- -cGAcGGGGGCAGcgcCGACG-C-GCGCg -3'
miRNA:   3'- cuCUaCCUCCGUCu--GCUGCaGaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 110237 0.66 0.902819
Target:  5'- gGGGggGGGGGgGGGgGGCGUacUUGCaGCg -3'
miRNA:   3'- -CUCuaCCUCCgUCUgCUGCA--GACG-CG- -5'
6545 3' -55.6 NC_001847.1 + 96805 0.66 0.902819
Target:  5'- uGGGucgGGGGGCGcgcagcGGCGGCGaCcGCGCg -3'
miRNA:   3'- -CUCua-CCUCCGU------CUGCUGCaGaCGCG- -5'
6545 3' -55.6 NC_001847.1 + 7424 0.66 0.902819
Target:  5'- gGGGggGGGGGgGGGgGGCGUacUUGCaGCg -3'
miRNA:   3'- -CUCuaCCUCCgUCUgCUGCA--GACG-CG- -5'
6545 3' -55.6 NC_001847.1 + 44789 0.66 0.900256
Target:  5'- ---uUGGcGGGaCGGACGACGgcggcuuuggcggCUGCGCc -3'
miRNA:   3'- cucuACC-UCC-GUCUGCUGCa------------GACGCG- -5'
6545 3' -55.6 NC_001847.1 + 66338 0.66 0.896339
Target:  5'- cGGGUGGGGcGCGGGCGcCGcCgugGCGa -3'
miRNA:   3'- cUCUACCUC-CGUCUGCuGCaGa--CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.