miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6545 5' -51.9 NC_001847.1 + 963 0.66 0.985152
Target:  5'- uCCACGCu-GCGCCG-GGCGUcUAUg- -3'
miRNA:   3'- -GGUGUGuuUGUGGCaCCGCGuGUAga -5'
6545 5' -51.9 NC_001847.1 + 104229 0.66 0.985152
Target:  5'- cCCGC-C--GCACCGccGGCGCGCGccUCa -3'
miRNA:   3'- -GGUGuGuuUGUGGCa-CCGCGUGU--AGa -5'
6545 5' -51.9 NC_001847.1 + 34373 0.66 0.985152
Target:  5'- gCCA-GCGAGCGCCaUGGCGCGgGg-- -3'
miRNA:   3'- -GGUgUGUUUGUGGcACCGCGUgUaga -5'
6545 5' -51.9 NC_001847.1 + 3275 0.66 0.985152
Target:  5'- gCCGCGCG---GCCGgcgagcacGGCGCGCAgcUCg -3'
miRNA:   3'- -GGUGUGUuugUGGCa-------CCGCGUGU--AGa -5'
6545 5' -51.9 NC_001847.1 + 26402 0.66 0.985152
Target:  5'- gCgGCAgGAACGCCGUcGCGuCGCAgUCg -3'
miRNA:   3'- -GgUGUgUUUGUGGCAcCGC-GUGU-AGa -5'
6545 5' -51.9 NC_001847.1 + 98922 0.66 0.985152
Target:  5'- gCGCGuCGAAgGCCGccaggagGGCGCGCAg-- -3'
miRNA:   3'- gGUGU-GUUUgUGGCa------CCGCGUGUaga -5'
6545 5' -51.9 NC_001847.1 + 82888 0.66 0.985152
Target:  5'- gCACGCGAGCACgaaGcGGCGCGucuUGUCa -3'
miRNA:   3'- gGUGUGUUUGUGg--CaCCGCGU---GUAGa -5'
6545 5' -51.9 NC_001847.1 + 106088 0.66 0.985152
Target:  5'- gCCGCGCG---GCCGgcgagcacGGCGCGCAgcUCg -3'
miRNA:   3'- -GGUGUGUuugUGGCa-------CCGCGUGU--AGa -5'
6545 5' -51.9 NC_001847.1 + 82081 0.66 0.985152
Target:  5'- aCgGCGCGucuGACGCCGUcgccggagGGCGCcuGCGUUUg -3'
miRNA:   3'- -GgUGUGU---UUGUGGCA--------CCGCG--UGUAGA- -5'
6545 5' -51.9 NC_001847.1 + 104958 0.66 0.985152
Target:  5'- -aAgGCGAGCGCCG-GGCGC-CAgggCUc -3'
miRNA:   3'- ggUgUGUUUGUGGCaCCGCGuGUa--GA- -5'
6545 5' -51.9 NC_001847.1 + 3981 0.66 0.985152
Target:  5'- gCGC-CGGGgGCCG-GGCGCGCGg-- -3'
miRNA:   3'- gGUGuGUUUgUGGCaCCGCGUGUaga -5'
6545 5' -51.9 NC_001847.1 + 68081 0.66 0.985152
Target:  5'- gCgGgGCGAACGCCGcGGCGCGag-Cg -3'
miRNA:   3'- -GgUgUGUUUGUGGCaCCGCGUguaGa -5'
6545 5' -51.9 NC_001847.1 + 100212 0.66 0.985152
Target:  5'- gCCGCGCAGcuGCGCCaGcGGCgGCgggACAUCg -3'
miRNA:   3'- -GGUGUGUU--UGUGG-CaCCG-CG---UGUAGa -5'
6545 5' -51.9 NC_001847.1 + 2145 0.66 0.985152
Target:  5'- -aAgGCGAGCGCCG-GGCGC-CAgggCUc -3'
miRNA:   3'- ggUgUGUUUGUGGCaCCGCGuGUa--GA- -5'
6545 5' -51.9 NC_001847.1 + 69499 0.66 0.985152
Target:  5'- gCGCGCAcGCgGCCGuUGGCgGCGCAg-- -3'
miRNA:   3'- gGUGUGUuUG-UGGC-ACCG-CGUGUaga -5'
6545 5' -51.9 NC_001847.1 + 51272 0.66 0.985152
Target:  5'- -gAUGCA-GCGCCGcGGCGCGC-UCg -3'
miRNA:   3'- ggUGUGUuUGUGGCaCCGCGUGuAGa -5'
6545 5' -51.9 NC_001847.1 + 130934 0.66 0.984605
Target:  5'- aCCGCGCAGggcuuuggcugccuGCGCgCGgcccacgGGCGCGCGg-- -3'
miRNA:   3'- -GGUGUGUU--------------UGUG-GCa------CCGCGUGUaga -5'
6545 5' -51.9 NC_001847.1 + 76262 0.66 0.984044
Target:  5'- gCGCACcucgccaacgagacuAAGCACUGccUGGCGCGCGg-- -3'
miRNA:   3'- gGUGUG---------------UUUGUGGC--ACCGCGUGUaga -5'
6545 5' -51.9 NC_001847.1 + 118305 0.66 0.98327
Target:  5'- aCUACACcuGCACCGccacUGGCuacccgGCACcgCUg -3'
miRNA:   3'- -GGUGUGuuUGUGGC----ACCG------CGUGuaGA- -5'
6545 5' -51.9 NC_001847.1 + 56046 0.66 0.98327
Target:  5'- uCCACAgGcACGgCGcGGCGCACGg-- -3'
miRNA:   3'- -GGUGUgUuUGUgGCaCCGCGUGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.