miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6549 3' -66.3 NC_001847.1 + 71604 0.66 0.456881
Target:  5'- gCC-GGCCCAGGCggCGCcaGCAGCGcGGAc -3'
miRNA:   3'- -GGcCCGGGUCCGg-GCGc-CGUCGC-UCU- -5'
6549 3' -66.3 NC_001847.1 + 104357 0.66 0.456881
Target:  5'- -aGGcGCCCGGGCCgaagaCGCG-CcGCGAGGc -3'
miRNA:   3'- ggCC-CGGGUCCGG-----GCGCcGuCGCUCU- -5'
6549 3' -66.3 NC_001847.1 + 18490 0.66 0.456881
Target:  5'- gCaGGCcaCCAGcguGCCCGCGGCuGcCGAGGc -3'
miRNA:   3'- gGcCCG--GGUC---CGGGCGCCGuC-GCUCU- -5'
6549 3' -66.3 NC_001847.1 + 73298 0.66 0.456881
Target:  5'- gCGcGGCCUAcGCCgGCGaCGGCGAGu -3'
miRNA:   3'- gGC-CCGGGUcCGGgCGCcGUCGCUCu -5'
6549 3' -66.3 NC_001847.1 + 17194 0.66 0.456881
Target:  5'- aUCGGGUcggCCAGGCCCaGCucuGCGGCGc-- -3'
miRNA:   3'- -GGCCCG---GGUCCGGG-CGc--CGUCGCucu -5'
6549 3' -66.3 NC_001847.1 + 51921 0.66 0.456881
Target:  5'- aCGGGCUCAcGGCgaUCGUGGCcggGGCGcGAc -3'
miRNA:   3'- gGCCCGGGU-CCG--GGCGCCG---UCGCuCU- -5'
6549 3' -66.3 NC_001847.1 + 256 0.66 0.456881
Target:  5'- cCCGGcGCCCagGGGCCCGagccCGGgGGCcgccGAGc -3'
miRNA:   3'- -GGCC-CGGG--UCCGGGC----GCCgUCG----CUCu -5'
6549 3' -66.3 NC_001847.1 + 103069 0.66 0.456881
Target:  5'- cCCGGcGCCCagGGGCCCGagccCGGgGGCcgccGAGc -3'
miRNA:   3'- -GGCC-CGGG--UCCGGGC----GCCgUCG----CUCu -5'
6549 3' -66.3 NC_001847.1 + 46332 0.66 0.456881
Target:  5'- aCGGccGCCCgcgGGGCCgCGuCGGCGGCaucGGGGg -3'
miRNA:   3'- gGCC--CGGG---UCCGG-GC-GCCGUCG---CUCU- -5'
6549 3' -66.3 NC_001847.1 + 61864 0.66 0.456881
Target:  5'- gCCGcGCCUgccGGcGCCCGCGGggguugcaCGGCGAGc -3'
miRNA:   3'- -GGCcCGGG---UC-CGGGCGCC--------GUCGCUCu -5'
6549 3' -66.3 NC_001847.1 + 101160 0.66 0.456881
Target:  5'- gCUGGGCCCAGcccggccagcgcGCCCGgCGcCAGCGc-- -3'
miRNA:   3'- -GGCCCGGGUC------------CGGGC-GCcGUCGCucu -5'
6549 3' -66.3 NC_001847.1 + 94194 0.66 0.456881
Target:  5'- gCGGGCaguuCgAGGCgCUGCGcGCGGCG-GAg -3'
miRNA:   3'- gGCCCG----GgUCCG-GGCGC-CGUCGCuCU- -5'
6549 3' -66.3 NC_001847.1 + 69873 0.66 0.456881
Target:  5'- uCUGGaGCUCGGGCUCuCGGUGGCGuGc -3'
miRNA:   3'- -GGCC-CGGGUCCGGGcGCCGUCGCuCu -5'
6549 3' -66.3 NC_001847.1 + 1544 0.66 0.456881
Target:  5'- -aGGcGCCCGGGCCgaagaCGCG-CcGCGAGGc -3'
miRNA:   3'- ggCC-CGGGUCCGG-----GCGCcGuCGCUCU- -5'
6549 3' -66.3 NC_001847.1 + 123819 0.66 0.456881
Target:  5'- uCCGGcGCCagccGCCCGcCGGCcucGGCGGGc -3'
miRNA:   3'- -GGCC-CGGguc-CGGGC-GCCG---UCGCUCu -5'
6549 3' -66.3 NC_001847.1 + 14141 0.66 0.456881
Target:  5'- gCgGGGCCCGcGCCUggGCGGCcgcuagGGCGAc- -3'
miRNA:   3'- -GgCCCGGGUcCGGG--CGCCG------UCGCUcu -5'
6549 3' -66.3 NC_001847.1 + 112749 0.66 0.456016
Target:  5'- gCGGGuuguccgucgcgaCCCcGGCCCGCGGgGGCc--- -3'
miRNA:   3'- gGCCC-------------GGGuCCGGGCGCCgUCGcucu -5'
6549 3' -66.3 NC_001847.1 + 56675 0.66 0.454289
Target:  5'- gUCGGGCagcuuggagacguaCCuGGCgCGCGGCGGCu--- -3'
miRNA:   3'- -GGCCCG--------------GGuCCGgGCGCCGUCGcucu -5'
6549 3' -66.3 NC_001847.1 + 129363 0.66 0.454289
Target:  5'- gCCGGGCCCGGGgcuagacgccgcgcUUCGCGuuGGCGcgccGGAc -3'
miRNA:   3'- -GGCCCGGGUCC--------------GGGCGCcgUCGC----UCU- -5'
6549 3' -66.3 NC_001847.1 + 114078 0.66 0.451705
Target:  5'- gUCGGGCCCcgccccagggccucaGGGCCgGgGGUcuCGGGGc -3'
miRNA:   3'- -GGCCCGGG---------------UCCGGgCgCCGucGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.