miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6549 5' -53.5 NC_001847.1 + 62919 0.65 0.973149
Target:  5'- gCUCGgGGcCCG-CGGGCGGCuccucgucgggGGGCa -3'
miRNA:   3'- gGAGCaUC-GGCaGCUUGCCGua---------CUCG- -5'
6549 5' -53.5 NC_001847.1 + 58380 0.65 0.972875
Target:  5'- gCCUCGUAGCgGgugccggCGGGCagcagcucuucguaGGCGaaGAGCa -3'
miRNA:   3'- -GGAGCAUCGgCa------GCUUG--------------CCGUa-CUCG- -5'
6549 5' -53.5 NC_001847.1 + 94128 0.65 0.972875
Target:  5'- aCCUCGUGuacuacugggagguGCUGggCGAcaucucGCGGCGgcugcUGGGCg -3'
miRNA:   3'- -GGAGCAU--------------CGGCa-GCU------UGCCGU-----ACUCG- -5'
6549 5' -53.5 NC_001847.1 + 27675 0.66 0.9709
Target:  5'- gCUCGacgcGGCgCGUCGGGCugaGGCGcgcGAGCg -3'
miRNA:   3'- gGAGCa---UCG-GCAGCUUG---CCGUa--CUCG- -5'
6549 5' -53.5 NC_001847.1 + 29095 0.66 0.9709
Target:  5'- gCCggCG-AGCaCGgcgCGGGCGGCGcgcGAGCg -3'
miRNA:   3'- -GGa-GCaUCG-GCa--GCUUGCCGUa--CUCG- -5'
6549 5' -53.5 NC_001847.1 + 100362 0.66 0.9709
Target:  5'- -gUCGUAGCCGcgcgccgCGGccGCGGCGcGcAGCc -3'
miRNA:   3'- ggAGCAUCGGCa------GCU--UGCCGUaC-UCG- -5'
6549 5' -53.5 NC_001847.1 + 17885 0.66 0.9709
Target:  5'- uCCUCG-GGCgGggCGGGCGGCGgcguGCu -3'
miRNA:   3'- -GGAGCaUCGgCa-GCUUGCCGUacu-CG- -5'
6549 5' -53.5 NC_001847.1 + 43496 0.66 0.9709
Target:  5'- gCCgCGccGCCGUCGAucgcuacuggGCGGCGcgcgcGGGCu -3'
miRNA:   3'- -GGaGCauCGGCAGCU----------UGCCGUa----CUCG- -5'
6549 5' -53.5 NC_001847.1 + 86418 0.66 0.9709
Target:  5'- gCUCGUGGauuUGUUGGcggcgcugcGCGGCGcGGGCa -3'
miRNA:   3'- gGAGCAUCg--GCAGCU---------UGCCGUaCUCG- -5'
6549 5' -53.5 NC_001847.1 + 131908 0.66 0.9709
Target:  5'- gCCggCG-AGCaCGgcgCGGGCGGCGcgcGAGCg -3'
miRNA:   3'- -GGa-GCaUCG-GCa--GCUUGCCGUa--CUCG- -5'
6549 5' -53.5 NC_001847.1 + 89158 0.66 0.9709
Target:  5'- aCCUCG--GCCuuGUCGGcgGCGGCAaGAuGCu -3'
miRNA:   3'- -GGAGCauCGG--CAGCU--UGCCGUaCU-CG- -5'
6549 5' -53.5 NC_001847.1 + 80241 0.66 0.9709
Target:  5'- gCCaCGUuGCCGggUCG-ACGGCGUGccgcAGCa -3'
miRNA:   3'- -GGaGCAuCGGC--AGCuUGCCGUAC----UCG- -5'
6549 5' -53.5 NC_001847.1 + 110798 0.66 0.9709
Target:  5'- cCCUacCGaaaaGGCCG-CGcGCGGCGUGGcGCg -3'
miRNA:   3'- -GGA--GCa---UCGGCaGCuUGCCGUACU-CG- -5'
6549 5' -53.5 NC_001847.1 + 12598 0.66 0.9709
Target:  5'- aCUCGUgcGGCCaG-CGAcCGGCAggguccGGGCg -3'
miRNA:   3'- gGAGCA--UCGG-CaGCUuGCCGUa-----CUCG- -5'
6549 5' -53.5 NC_001847.1 + 103159 0.66 0.9709
Target:  5'- uCCUCGcGGCUcgaGGGCGGCGUccacgGGGCc -3'
miRNA:   3'- -GGAGCaUCGGcagCUUGCCGUA-----CUCG- -5'
6549 5' -53.5 NC_001847.1 + 130488 0.66 0.9709
Target:  5'- gCUCGacgcGGCgCGUCGGGCugaGGCGcgcGAGCg -3'
miRNA:   3'- gGAGCa---UCG-GCAGCUUG---CCGUa--CUCG- -5'
6549 5' -53.5 NC_001847.1 + 19243 0.66 0.967903
Target:  5'- gCCUgCGcgAGCCGgccaAGCGGCGcGAGCc -3'
miRNA:   3'- -GGA-GCa-UCGGCagc-UUGCCGUaCUCG- -5'
6549 5' -53.5 NC_001847.1 + 34504 0.66 0.967903
Target:  5'- gCgagCGaGGCCGacgCGGACGGCGccGGCg -3'
miRNA:   3'- gGa--GCaUCGGCa--GCUUGCCGUacUCG- -5'
6549 5' -53.5 NC_001847.1 + 4535 0.66 0.967903
Target:  5'- gCCUCGcggcGGCCGcccgCGggUGGCGc-GGCg -3'
miRNA:   3'- -GGAGCa---UCGGCa---GCuuGCCGUacUCG- -5'
6549 5' -53.5 NC_001847.1 + 15505 0.66 0.967903
Target:  5'- -aUCGUGGa-GUCGAugcggcuCGGCggGAGCc -3'
miRNA:   3'- ggAGCAUCggCAGCUu------GCCGuaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.