miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
655 3' -54 AC_000017.1 + 24495 0.66 0.592386
Target:  5'- -uGGCgaGGGGCAcaucGCUGCGCuCUugcAACGCGu -3'
miRNA:   3'- cuCCG--UCUCGU----UGACGCG-GA---UUGUGU- -5'
655 3' -54 AC_000017.1 + 25019 0.66 0.592386
Target:  5'- -uGGCGauGAGCAGCUgGCGCgCUGGCu-- -3'
miRNA:   3'- cuCCGU--CUCGUUGA-CGCG-GAUUGugu -5'
655 3' -54 AC_000017.1 + 32352 0.66 0.580781
Target:  5'- -cGGCAGucagguacuuGCAACUGUGUC-AGCACu -3'
miRNA:   3'- cuCCGUCu---------CGUUGACGCGGaUUGUGu -5'
655 3' -54 AC_000017.1 + 25387 0.66 0.580781
Target:  5'- uGGGCGuguGGCAGCaGUGCCUGgaggaGCGCAa -3'
miRNA:   3'- cUCCGUc--UCGUUGaCGCGGAU-----UGUGU- -5'
655 3' -54 AC_000017.1 + 11233 0.67 0.546293
Target:  5'- gGAGG-AGGGCGA--GgGCCUGGCGCGg -3'
miRNA:   3'- -CUCCgUCUCGUUgaCgCGGAUUGUGU- -5'
655 3' -54 AC_000017.1 + 11148 0.67 0.534937
Target:  5'- cAGGaGGGGCAACauccGCGgCUGACGCGg -3'
miRNA:   3'- cUCCgUCUCGUUGa---CGCgGAUUGUGU- -5'
655 3' -54 AC_000017.1 + 24831 0.68 0.501405
Target:  5'- uGAGGguGA-CAACgcGCGCCUAGC-CGu -3'
miRNA:   3'- -CUCCguCUcGUUGa-CGCGGAUUGuGU- -5'
655 3' -54 AC_000017.1 + 26531 0.68 0.458213
Target:  5'- cGGGCAGuGcCGGCgGCGCCUGAggaGCGg -3'
miRNA:   3'- cUCCGUCuC-GUUGaCGCGGAUUg--UGU- -5'
655 3' -54 AC_000017.1 + 8647 0.7 0.35983
Target:  5'- gGGGGCAGGGgcACgucgGCGCCgcGCGCGg -3'
miRNA:   3'- -CUCCGUCUCguUGa---CGCGGauUGUGU- -5'
655 3' -54 AC_000017.1 + 4896 0.71 0.316474
Target:  5'- cAGGUuccuGAGCAGCUGCGaCUUAcCGCAg -3'
miRNA:   3'- cUCCGu---CUCGUUGACGC-GGAUuGUGU- -5'
655 3' -54 AC_000017.1 + 26857 0.77 0.140483
Target:  5'- gGAGGaGGAGC-GCUGCGUCUGGCGCc -3'
miRNA:   3'- -CUCCgUCUCGuUGACGCGGAUUGUGu -5'
655 3' -54 AC_000017.1 + 27893 1.08 0.00064
Target:  5'- aGAGGCAGAGCAACUGCGCCUAACACAc -3'
miRNA:   3'- -CUCCGUCUCGUUGACGCGGAUUGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.