miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6556 3' -62.1 NC_001847.1 + 135139 0.66 0.653656
Target:  5'- --uCCGCGCCCcccGCGC-GGGGGCu--- -3'
miRNA:   3'- cguGGCGCGGG---UGCGaCCUCCGcagc -5'
6556 3' -62.1 NC_001847.1 + 28853 0.66 0.653656
Target:  5'- cGCgGCCGCGCgCgcgacgccggcgGCGCUGG-GGCGa-- -3'
miRNA:   3'- -CG-UGGCGCGgG------------UGCGACCuCCGCagc -5'
6556 3' -62.1 NC_001847.1 + 13422 0.66 0.653656
Target:  5'- aGCGCuCGCggagcgggGCCUGCGCUGGcuguaucuagcGGGCG-CGc -3'
miRNA:   3'- -CGUG-GCG--------CGGGUGCGACC-----------UCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 95306 0.66 0.653656
Target:  5'- gGCuggCGCGCgCCACGCaGGAaGCGcUCGg -3'
miRNA:   3'- -CGug-GCGCG-GGUGCGaCCUcCGC-AGC- -5'
6556 3' -62.1 NC_001847.1 + 55666 0.66 0.653656
Target:  5'- cGCGCCGCGCUCcggcuCGCgc-AGGCGgcCGg -3'
miRNA:   3'- -CGUGGCGCGGGu----GCGaccUCCGCa-GC- -5'
6556 3' -62.1 NC_001847.1 + 103098 0.66 0.653656
Target:  5'- cCGCCGaGCCCGCGC---GGGCGcCGu -3'
miRNA:   3'- cGUGGCgCGGGUGCGaccUCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 121767 0.66 0.653656
Target:  5'- cGCGCCcggacgugcGCGCCguuCGCgGCUGGA-GCGUCc -3'
miRNA:   3'- -CGUGG---------CGCGG---GUG-CGACCUcCGCAGc -5'
6556 3' -62.1 NC_001847.1 + 33191 0.66 0.653656
Target:  5'- gGCuCUGCGCCCgacuuggcgGCGCgGGuGGC-UCGg -3'
miRNA:   3'- -CGuGGCGCGGG---------UGCGaCCuCCGcAGC- -5'
6556 3' -62.1 NC_001847.1 + 52026 0.66 0.653656
Target:  5'- cGCACUaGCGCUCGCGCcaGGGGC-UCa -3'
miRNA:   3'- -CGUGG-CGCGGGUGCGacCUCCGcAGc -5'
6556 3' -62.1 NC_001847.1 + 285 0.66 0.653656
Target:  5'- cCGCCGaGCCCGCGC---GGGCGcCGu -3'
miRNA:   3'- cGUGGCgCGGGUGCGaccUCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 33558 0.66 0.653656
Target:  5'- --gUCGagGCgCACGCgGGGGGCGUCu -3'
miRNA:   3'- cguGGCg-CGgGUGCGaCCUCCGCAGc -5'
6556 3' -62.1 NC_001847.1 + 16843 0.66 0.653656
Target:  5'- gGCAUCGgGgCgGCGCUcGAGGCGagCGg -3'
miRNA:   3'- -CGUGGCgCgGgUGCGAcCUCCGCa-GC- -5'
6556 3' -62.1 NC_001847.1 + 83026 0.66 0.652674
Target:  5'- gGCGCCGCcgGCCCGCGgccgcuagugcgcUUGGGccgcGGCG-CGg -3'
miRNA:   3'- -CGUGGCG--CGGGUGC-------------GACCU----CCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 78219 0.66 0.647759
Target:  5'- uGCACCGUcguguucccgggcggGUUCGCcCUGGAGGCcgacGUCGc -3'
miRNA:   3'- -CGUGGCG---------------CGGGUGcGACCUCCG----CAGC- -5'
6556 3' -62.1 NC_001847.1 + 130224 0.66 0.643825
Target:  5'- gGCGCUGUugccGCCgGCGC-GGucGGUGUCGu -3'
miRNA:   3'- -CGUGGCG----CGGgUGCGaCCu-CCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 46523 0.66 0.643825
Target:  5'- cGCGCaCGUGCgCGCGCacaaagUGGAGcGCG-CGc -3'
miRNA:   3'- -CGUG-GCGCGgGUGCG------ACCUC-CGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 43080 0.66 0.643825
Target:  5'- gGCGCUGCugGCUCggcggcggagGCGCccGGAGGCGcCGg -3'
miRNA:   3'- -CGUGGCG--CGGG----------UGCGa-CCUCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 27411 0.66 0.643825
Target:  5'- gGCGCUGUugccGCCgGCGC-GGucGGUGUCGu -3'
miRNA:   3'- -CGUGGCG----CGGgUGCGaCCu-CCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 119508 0.66 0.643825
Target:  5'- cUACUG-GUUCAUGCgccacGGGGGCGUCGu -3'
miRNA:   3'- cGUGGCgCGGGUGCGa----CCUCCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 119262 0.66 0.643825
Target:  5'- -gGCgGCGCCCGCGC-GGcu-CGUCGa -3'
miRNA:   3'- cgUGgCGCGGGUGCGaCCuccGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.