miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6556 3' -62.1 NC_001847.1 + 27081 1.09 0.000816
Target:  5'- gGCACCGCGCCCACGCUGGAGGCGUCGc -3'
miRNA:   3'- -CGUGGCGCGGGUGCGACCUCCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 74411 0.85 0.039736
Target:  5'- cGCGCCGCGCCCGCGCccgucgUGGAGGuCGUgGc -3'
miRNA:   3'- -CGUGGCGCGGGUGCG------ACCUCC-GCAgC- -5'
6556 3' -62.1 NC_001847.1 + 34694 0.82 0.061738
Target:  5'- aGCGCUggcgcgaggacuuGCGCgCCGCGCUGGAGcGCGUCGa -3'
miRNA:   3'- -CGUGG-------------CGCG-GGUGCGACCUC-CGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 132184 0.82 0.066721
Target:  5'- gGCGCUGCGCgccgaggcggccgCCGCGCUGGAGGCGgccgCGc -3'
miRNA:   3'- -CGUGGCGCG-------------GGUGCGACCUCCGCa---GC- -5'
6556 3' -62.1 NC_001847.1 + 29371 0.82 0.066721
Target:  5'- gGCGCUGCGCgccgaggcggccgCCGCGCUGGAGGCGgccgCGc -3'
miRNA:   3'- -CGUGGCGCG-------------GGUGCGACCUCCGCa---GC- -5'
6556 3' -62.1 NC_001847.1 + 3925 0.81 0.07551
Target:  5'- gGUugCGCGCCCGCGCUGGcgccgcggcgggggGGGCGcCGu -3'
miRNA:   3'- -CGugGCGCGGGUGCGACC--------------UCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 106738 0.81 0.07551
Target:  5'- gGUugCGCGCCCGCGCUGGcgccgcggcgggggGGGCGcCGu -3'
miRNA:   3'- -CGugGCGCGGGUGCGACC--------------UCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 131963 0.8 0.084317
Target:  5'- uGCGCCGuCGCCUgccgcgagGCGCUGGAGGCGg-- -3'
miRNA:   3'- -CGUGGC-GCGGG--------UGCGACCUCCGCagc -5'
6556 3' -62.1 NC_001847.1 + 29150 0.8 0.084317
Target:  5'- uGCGCCGuCGCCUgccgcgagGCGCUGGAGGCGg-- -3'
miRNA:   3'- -CGUGGC-GCGGG--------UGCGACCUCCGCagc -5'
6556 3' -62.1 NC_001847.1 + 74277 0.79 0.105746
Target:  5'- cGCGCgCGCGCUCGCGCUGGccucggcGGGCG-CGg -3'
miRNA:   3'- -CGUG-GCGCGGGUGCGACC-------UCCGCaGC- -5'
6556 3' -62.1 NC_001847.1 + 127034 0.79 0.106014
Target:  5'- gGCcCCGCGCCUGCGCUGGcgccGCGUCGc -3'
miRNA:   3'- -CGuGGCGCGGGUGCGACCuc--CGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 116175 0.79 0.111503
Target:  5'- gGCGCCGCGgCCGCGCUGGu--CGUCGc -3'
miRNA:   3'- -CGUGGCGCgGGUGCGACCuccGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 50084 0.78 0.131887
Target:  5'- gGCACCGCGCCCcugaugcucggccaGCuGCUGGGGGCcgggcuggggcuGUCGc -3'
miRNA:   3'- -CGUGGCGCGGG--------------UG-CGACCUCCG------------CAGC- -5'
6556 3' -62.1 NC_001847.1 + 91549 0.77 0.136222
Target:  5'- aGCACCGgccccaGCgCCACGCUGGGGcgcGCGUCGc -3'
miRNA:   3'- -CGUGGCg-----CG-GGUGCGACCUC---CGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 47885 0.77 0.139644
Target:  5'- cGCGCgCGCGCCCGCGCgccGGGGCG-Ca -3'
miRNA:   3'- -CGUG-GCGCGGGUGCGac-CUCCGCaGc -5'
6556 3' -62.1 NC_001847.1 + 73706 0.77 0.143146
Target:  5'- uCGCCGCGCCCggcgGCGC-GGccgcGGGCGUCGa -3'
miRNA:   3'- cGUGGCGCGGG----UGCGaCC----UCCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 73874 0.77 0.145285
Target:  5'- gGCGCgGCGCCCGCGCgcgccgcggacgcGGAcGGCGUUGc -3'
miRNA:   3'- -CGUGgCGCGGGUGCGa------------CCU-CCGCAGC- -5'
6556 3' -62.1 NC_001847.1 + 955 0.77 0.146728
Target:  5'- cGCGCCGC-UCCACGCUGcGccGGGCGUCu -3'
miRNA:   3'- -CGUGGCGcGGGUGCGAC-C--UCCGCAGc -5'
6556 3' -62.1 NC_001847.1 + 66186 0.77 0.146728
Target:  5'- cGgGCCGCGCuggacgCCugGCUGGAGGCG-Ca -3'
miRNA:   3'- -CgUGGCGCG------GGugCGACCUCCGCaGc -5'
6556 3' -62.1 NC_001847.1 + 31055 0.77 0.150391
Target:  5'- cCACCGCGCCgCcaacCGCUGGGGGC-UCGg -3'
miRNA:   3'- cGUGGCGCGG-Gu---GCGACCUCCGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.