miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6556 5' -51.8 NC_001847.1 + 110353 0.66 0.987111
Target:  5'- gGCCGcgagGGCguuguguggacgCUCUUCGACGaccgCGCGucGCa -3'
miRNA:   3'- -CGGU----UCG------------GAGAAGCUGCa---GCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 87786 0.66 0.987111
Target:  5'- aCCGgggcGGCCUCUUCcGCGUCuuCGAcGCg -3'
miRNA:   3'- cGGU----UCGGAGAAGcUGCAGc-GCUuUG- -5'
6556 5' -51.8 NC_001847.1 + 71950 0.66 0.987111
Target:  5'- cGCCGcGCCgcacgUCGugG-CGCGgcGCg -3'
miRNA:   3'- -CGGUuCGGaga--AGCugCaGCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 102263 0.66 0.987111
Target:  5'- gGCCcccgAGGCCUCgccgUCGGcCGcCGUGAGGu -3'
miRNA:   3'- -CGG----UUCGGAGa---AGCU-GCaGCGCUUUg -5'
6556 5' -51.8 NC_001847.1 + 32857 0.66 0.986949
Target:  5'- cGCCGGGCC-CaUCGACcUCacggcggccgacgGCGAGGCc -3'
miRNA:   3'- -CGGUUCGGaGaAGCUGcAG-------------CGCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 117428 0.66 0.986785
Target:  5'- cGCCGAGCCgCUguacgugcacugCGGCGUgGcCGAcAACg -3'
miRNA:   3'- -CGGUUCGGaGAa-----------GCUGCAgC-GCU-UUG- -5'
6556 5' -51.8 NC_001847.1 + 33721 0.66 0.98542
Target:  5'- gGCCGAGCUgggggagCGACG-CGCaGAGCu -3'
miRNA:   3'- -CGGUUCGGagaa---GCUGCaGCGcUUUG- -5'
6556 5' -51.8 NC_001847.1 + 60722 0.66 0.98542
Target:  5'- cGCCAcGaCCUCcaCGACGggCGCGGGcGCg -3'
miRNA:   3'- -CGGUuC-GGAGaaGCUGCa-GCGCUU-UG- -5'
6556 5' -51.8 NC_001847.1 + 115738 0.66 0.98542
Target:  5'- cGCUuuGCCUgCUgCGuCGcCGCGGAGCc -3'
miRNA:   3'- -CGGuuCGGA-GAaGCuGCaGCGCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 80633 0.66 0.98542
Target:  5'- uGCCGauGGCgaCggCGGCGcUCGCGGGAg -3'
miRNA:   3'- -CGGU--UCGgaGaaGCUGC-AGCGCUUUg -5'
6556 5' -51.8 NC_001847.1 + 77685 0.66 0.98542
Target:  5'- gGCCGAGCgCUUcaaggCGGCGUgCGCGcgcGCg -3'
miRNA:   3'- -CGGUUCG-GAGaa---GCUGCA-GCGCuu-UG- -5'
6556 5' -51.8 NC_001847.1 + 93008 0.66 0.98542
Target:  5'- cGCCGGGCCagCUcUCGccaACG-CGgGAAGCg -3'
miRNA:   3'- -CGGUUCGGa-GA-AGC---UGCaGCgCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 87999 0.66 0.98542
Target:  5'- gGCCGGGCC-CgaggggcgCGGCGUCaucgGCGAGuACu -3'
miRNA:   3'- -CGGUUCGGaGaa------GCUGCAG----CGCUU-UG- -5'
6556 5' -51.8 NC_001847.1 + 47863 0.66 0.98542
Target:  5'- gGCCGcgGGCCgUCggcgCGcACGUcCGCGAGAa -3'
miRNA:   3'- -CGGU--UCGG-AGaa--GC-UGCA-GCGCUUUg -5'
6556 5' -51.8 NC_001847.1 + 8469 0.66 0.98542
Target:  5'- cGCCGGGCCgggggCGGCGcUCggccggggGCGggGCc -3'
miRNA:   3'- -CGGUUCGGagaa-GCUGC-AG--------CGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 87561 0.66 0.98542
Target:  5'- uGCCGccGGCCUUccUCGGCGcgugCGCGGc-- -3'
miRNA:   3'- -CGGU--UCGGAGa-AGCUGCa---GCGCUuug -5'
6556 5' -51.8 NC_001847.1 + 52076 0.66 0.98542
Target:  5'- uGCCGuguuGCgCUCUUCGgccGCGcCGCGGcccaAGCg -3'
miRNA:   3'- -CGGUu---CG-GAGAAGC---UGCaGCGCU----UUG- -5'
6556 5' -51.8 NC_001847.1 + 111282 0.66 0.98542
Target:  5'- cGCCGGGCCgggggCGGCGcUCggccggggGCGggGCc -3'
miRNA:   3'- -CGGUUCGGagaa-GCUGC-AG--------CGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 77229 0.66 0.98542
Target:  5'- cGCCGGGCC-CggacUUGGCGcggUCGCGcGGGCg -3'
miRNA:   3'- -CGGUUCGGaGa---AGCUGC---AGCGC-UUUG- -5'
6556 5' -51.8 NC_001847.1 + 39646 0.66 0.983565
Target:  5'- cGCCAGGCCcacgggCGGCGcaaauauugCGCGGAAa -3'
miRNA:   3'- -CGGUUCGGagaa--GCUGCa--------GCGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.