miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6556 5' -51.8 NC_001847.1 + 786 0.71 0.840785
Target:  5'- cGCC-GGCCUCgUCGuCGUCcGaCGAGGCg -3'
miRNA:   3'- -CGGuUCGGAGaAGCuGCAG-C-GCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 1111 0.68 0.958084
Target:  5'- cGCCGcguGCCcCUgCGACGcUgGCGAGACc -3'
miRNA:   3'- -CGGUu--CGGaGAaGCUGC-AgCGCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 1268 0.66 0.981537
Target:  5'- cGCCGAGCCcccagCggUUGGCGgCGCGGuGGCu -3'
miRNA:   3'- -CGGUUCGGa----Ga-AGCUGCaGCGCU-UUG- -5'
6556 5' -51.8 NC_001847.1 + 1513 0.66 0.979326
Target:  5'- aGCCGcgcguaggcGGCCUCggCG-CG-CGCGAAGg -3'
miRNA:   3'- -CGGU---------UCGGAGaaGCuGCaGCGCUUUg -5'
6556 5' -51.8 NC_001847.1 + 3617 0.76 0.591733
Target:  5'- aGCCAGGCCa---UGGCGUCGCGgcGCg -3'
miRNA:   3'- -CGGUUCGGagaaGCUGCAGCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 4013 0.67 0.961787
Target:  5'- cGCCGGGCC----CGGCGcccgccucUCGCGggGCc -3'
miRNA:   3'- -CGGUUCGGagaaGCUGC--------AGCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 4086 0.68 0.958084
Target:  5'- gGCCucGGCCUCagcgUCGGCGUCGg----- -3'
miRNA:   3'- -CGGu-UCGGAGa---AGCUGCAGCgcuuug -5'
6556 5' -51.8 NC_001847.1 + 5164 0.71 0.857184
Target:  5'- gGCCAGGCaUCggCGGCGauuUCGgGGAACa -3'
miRNA:   3'- -CGGUUCGgAGaaGCUGC---AGCgCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 8469 0.66 0.98542
Target:  5'- cGCCGGGCCgggggCGGCGcUCggccggggGCGggGCc -3'
miRNA:   3'- -CGGUUCGGagaa-GCUGC-AG--------CGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 10034 0.67 0.961787
Target:  5'- uCCGGGCUUC-UCGcCGcCGCGAacGACa -3'
miRNA:   3'- cGGUUCGGAGaAGCuGCaGCGCU--UUG- -5'
6556 5' -51.8 NC_001847.1 + 10143 0.7 0.890136
Target:  5'- gGCCGuagcgcgagcgggagGGCUUUUUCGACG-CGCGcgGCu -3'
miRNA:   3'- -CGGU---------------UCGGAGAAGCUGCaGCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 10486 0.67 0.971518
Target:  5'- gGCCGAGCUgggCUUCcccGACGgcccCGCGcuGCu -3'
miRNA:   3'- -CGGUUCGGa--GAAG---CUGCa---GCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 11676 0.71 0.849089
Target:  5'- aGCCGAGCCcgCggCGGcCGUCGCcGGGCc -3'
miRNA:   3'- -CGGUUCGGa-GaaGCU-GCAGCGcUUUG- -5'
6556 5' -51.8 NC_001847.1 + 12465 0.66 0.981537
Target:  5'- gGCgGAGCCUCcgCGGCuuccCGCGugGCg -3'
miRNA:   3'- -CGgUUCGGAGaaGCUGca--GCGCuuUG- -5'
6556 5' -51.8 NC_001847.1 + 12645 0.66 0.976925
Target:  5'- aGCCGgcuguacacGGUCUCggagcgguaCGGCGaCGCGAAGCu -3'
miRNA:   3'- -CGGU---------UCGGAGaa-------GCUGCaGCGCUUUG- -5'
6556 5' -51.8 NC_001847.1 + 13462 0.66 0.979326
Target:  5'- aGCCGAGCCcggggUUUCG--GUCGCGGGc- -3'
miRNA:   3'- -CGGUUCGGa----GAAGCugCAGCGCUUug -5'
6556 5' -51.8 NC_001847.1 + 14249 0.67 0.961787
Target:  5'- cGCCGAGCCcgCUcu--CGUCGCGGccuuGACu -3'
miRNA:   3'- -CGGUUCGGa-GAagcuGCAGCGCU----UUG- -5'
6556 5' -51.8 NC_001847.1 + 14290 0.74 0.717676
Target:  5'- cGUCGAcCCUCUcCGGCGUCGCGGc-- -3'
miRNA:   3'- -CGGUUcGGAGAaGCUGCAGCGCUuug -5'
6556 5' -51.8 NC_001847.1 + 15373 0.67 0.971518
Target:  5'- gGCCA-GCCUUcggggcggUCGGCGUCGgGGc-- -3'
miRNA:   3'- -CGGUuCGGAGa-------AGCUGCAGCgCUuug -5'
6556 5' -51.8 NC_001847.1 + 17246 0.78 0.479545
Target:  5'- uGCCGAGCCUCcaCGGgguagcCGUUGCGGAACc -3'
miRNA:   3'- -CGGUUCGGAGaaGCU------GCAGCGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.