miRNA display CGI


Results 21 - 40 of 672 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6558 3' -62.3 NC_001847.1 + 130842 0.66 0.620101
Target:  5'- aGGcGGCGCgcgaguaccaaGGCGccGGCGCGCGccucguggccgccAAAGCc -3'
miRNA:   3'- -UC-CCGCG-----------CCGCacCCGCGCGC-------------UUUCG- -5'
6558 3' -62.3 NC_001847.1 + 58094 0.66 0.620101
Target:  5'- cGGGUGCcGCGccgcuacuacuucUGcGGCGCgGCGGauGAGCg -3'
miRNA:   3'- uCCCGCGcCGC-------------AC-CCGCG-CGCU--UUCG- -5'
6558 3' -62.3 NC_001847.1 + 125463 0.66 0.619113
Target:  5'- cGGGCGgguCGGCGgcagcucgcggcGGGCGCGaGGAcGCc -3'
miRNA:   3'- uCCCGC---GCCGCa-----------CCCGCGCgCUUuCG- -5'
6558 3' -62.3 NC_001847.1 + 6962 0.66 0.612198
Target:  5'- cGGGGuCGCGGCGgcgcuuccgcccgcGGGCcGCccagcagauaaaacGCGAcGAGCg -3'
miRNA:   3'- -UCCC-GCGCCGCa-------------CCCG-CG--------------CGCU-UUCG- -5'
6558 3' -62.3 NC_001847.1 + 102075 0.66 0.61121
Target:  5'- aAGGGCa-GGCGcGGGCcgcGCGCGAcccGGUc -3'
miRNA:   3'- -UCCCGcgCCGCaCCCG---CGCGCUu--UCG- -5'
6558 3' -62.3 NC_001847.1 + 74395 0.66 0.61121
Target:  5'- gGGGaccGCGCGGcCGccGcGCGCGCGcgGGCc -3'
miRNA:   3'- -UCC---CGCGCC-GCacC-CGCGCGCuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 103298 0.66 0.61121
Target:  5'- cAGcGGCgGCGGCG-GGGCGgcCGCGc--GCc -3'
miRNA:   3'- -UC-CCG-CGCCGCaCCCGC--GCGCuuuCG- -5'
6558 3' -62.3 NC_001847.1 + 60301 0.66 0.61121
Target:  5'- cGGG-GCGGCGgGcGGCaGCGCGc--GCg -3'
miRNA:   3'- uCCCgCGCCGCaC-CCG-CGCGCuuuCG- -5'
6558 3' -62.3 NC_001847.1 + 41822 0.66 0.61121
Target:  5'- cGGGCggGCGGCGcGGGUcccaGgGCuGGGGCa -3'
miRNA:   3'- uCCCG--CGCCGCaCCCG----CgCGcUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 78340 0.66 0.61121
Target:  5'- cAGGcGCGcCGGCcccGUGaGCGCGaCGAAcGGCg -3'
miRNA:   3'- -UCC-CGC-GCCG---CACcCGCGC-GCUU-UCG- -5'
6558 3' -62.3 NC_001847.1 + 61038 0.66 0.61121
Target:  5'- cGGGCGCGGCcgccccGGGCaccaGCGUgccaaucuGGAAGUu -3'
miRNA:   3'- uCCCGCGCCGca----CCCG----CGCG--------CUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 81265 0.66 0.61121
Target:  5'- gGGGGCccgcccgcccccGCGGCGgucGGCGC-CGccAGCg -3'
miRNA:   3'- -UCCCG------------CGCCGCac-CCGCGcGCuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 71075 0.66 0.61121
Target:  5'- gAGGGCGgcgaGGCGgccggccaGGGCGUccaGCGcccAGGCg -3'
miRNA:   3'- -UCCCGCg---CCGCa-------CCCGCG---CGCu--UUCG- -5'
6558 3' -62.3 NC_001847.1 + 95512 0.66 0.61121
Target:  5'- uGGGCcUGGC--GGGCGCGCc-AGGCu -3'
miRNA:   3'- uCCCGcGCCGcaCCCGCGCGcuUUCG- -5'
6558 3' -62.3 NC_001847.1 + 64212 0.66 0.61121
Target:  5'- cGGGuCGgGGUGcccGGGCggcgGCGCG-AAGCu -3'
miRNA:   3'- uCCC-GCgCCGCa--CCCG----CGCGCuUUCG- -5'
6558 3' -62.3 NC_001847.1 + 52540 0.66 0.61121
Target:  5'- cAGcGCGCGGCGcacaGGCGCcgccGCGAgcGCu -3'
miRNA:   3'- -UCcCGCGCCGCac--CCGCG----CGCUuuCG- -5'
6558 3' -62.3 NC_001847.1 + 485 0.66 0.61121
Target:  5'- cAGcGGCgGCGGCG-GGGCGgcCGCGc--GCc -3'
miRNA:   3'- -UC-CCG-CGCCGCaCCCGC--GCGCuuuCG- -5'
6558 3' -62.3 NC_001847.1 + 77901 0.66 0.61121
Target:  5'- --uGCGCGGCGgcgGuGGCGCaccucucgGCGAcGAGCc -3'
miRNA:   3'- uccCGCGCCGCa--C-CCGCG--------CGCU-UUCG- -5'
6558 3' -62.3 NC_001847.1 + 47862 0.66 0.61121
Target:  5'- cGGcCGCGGgcCGUcGGCGCGCacguccgcgaGAAAGCg -3'
miRNA:   3'- uCCcGCGCC--GCAcCCGCGCG----------CUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 7898 0.66 0.61121
Target:  5'- --aGC-CGcGCG-GGGCGCGCGgcGGCc -3'
miRNA:   3'- uccCGcGC-CGCaCCCGCGCGCuuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.