miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6558 5' -53.2 NC_001847.1 + 97326 0.66 0.951978
Target:  5'- -cGCgUCGG-CGUcGCGCCcGCCcGGCCg -3'
miRNA:   3'- caCG-AGCUaGCA-CGUGGaCGGuUUGG- -5'
6558 5' -53.2 NC_001847.1 + 44052 0.66 0.951978
Target:  5'- -cGCgUCGGggccgcccuguUCGUGCAgCUGUCGuGCCu -3'
miRNA:   3'- caCG-AGCU-----------AGCACGUgGACGGUuUGG- -5'
6558 5' -53.2 NC_001847.1 + 118140 0.66 0.951978
Target:  5'- cUGCU-GAUCG-GCGCCguUGCCAAGg- -3'
miRNA:   3'- cACGAgCUAGCaCGUGG--ACGGUUUgg -5'
6558 5' -53.2 NC_001847.1 + 89104 0.66 0.951978
Target:  5'- -aGCUCGA--GUGCgagaaaACCUuuGCCAAGCUg -3'
miRNA:   3'- caCGAGCUagCACG------UGGA--CGGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 17217 0.66 0.947675
Target:  5'- -aGUcgUCGAccguaaagacgUCGcGCGCgUGCCGAGCCu -3'
miRNA:   3'- caCG--AGCU-----------AGCaCGUGgACGGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 78638 0.66 0.947675
Target:  5'- gGUGCUuuuuggcggcgCGGUCGcgcGCGCCUGCgucGCCg -3'
miRNA:   3'- -CACGA-----------GCUAGCa--CGUGGACGguuUGG- -5'
6558 5' -53.2 NC_001847.1 + 33220 0.66 0.947675
Target:  5'- -gGCUCGGcUUG-GCGCCgcGCCGGgcGCCg -3'
miRNA:   3'- caCGAGCU-AGCaCGUGGa-CGGUU--UGG- -5'
6558 5' -53.2 NC_001847.1 + 65986 0.66 0.947675
Target:  5'- aGUGCaCGGcuaUGUGCACC-GCCGGGCa -3'
miRNA:   3'- -CACGaGCUa--GCACGUGGaCGGUUUGg -5'
6558 5' -53.2 NC_001847.1 + 28980 0.67 0.943124
Target:  5'- -cGC-CGGgaaCGUGCGCCaUGCUAGAgCg -3'
miRNA:   3'- caCGaGCUa--GCACGUGG-ACGGUUUgG- -5'
6558 5' -53.2 NC_001847.1 + 67409 0.67 0.943124
Target:  5'- -cGC-CGGcgCGUGUGCCgagagGCCAGGCUc -3'
miRNA:   3'- caCGaGCUa-GCACGUGGa----CGGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 122189 0.67 0.938323
Target:  5'- cUGCUUcAUCGcGCGCC-GCCAcacuAGCCg -3'
miRNA:   3'- cACGAGcUAGCaCGUGGaCGGU----UUGG- -5'
6558 5' -53.2 NC_001847.1 + 102470 0.67 0.938323
Target:  5'- -aGCUCGAgCGggcccGCGCC-GCCGGcGCCg -3'
miRNA:   3'- caCGAGCUaGCa----CGUGGaCGGUU-UGG- -5'
6558 5' -53.2 NC_001847.1 + 91474 0.67 0.938323
Target:  5'- -aGgUCG-UCGaGCACCUGCggCGGGCCa -3'
miRNA:   3'- caCgAGCuAGCaCGUGGACG--GUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 100329 0.67 0.938323
Target:  5'- -cGCcCGGUCG---GCCUGCCGcGCCa -3'
miRNA:   3'- caCGaGCUAGCacgUGGACGGUuUGG- -5'
6558 5' -53.2 NC_001847.1 + 87543 0.67 0.938323
Target:  5'- -cGCUgGgAUCcUGCgACCUGCCGccGGCCu -3'
miRNA:   3'- caCGAgC-UAGcACG-UGGACGGU--UUGG- -5'
6558 5' -53.2 NC_001847.1 + 99638 0.67 0.938323
Target:  5'- -cGCUCGG-CGcGCGCCgugGCCu--CCg -3'
miRNA:   3'- caCGAGCUaGCaCGUGGa--CGGuuuGG- -5'
6558 5' -53.2 NC_001847.1 + 35507 0.67 0.93327
Target:  5'- aUGCUCGG-CGUGCGC--GCCGGGgCu -3'
miRNA:   3'- cACGAGCUaGCACGUGgaCGGUUUgG- -5'
6558 5' -53.2 NC_001847.1 + 115708 0.67 0.93327
Target:  5'- -gGCUgCGGcccgUGUGCGCUUGCC--GCCa -3'
miRNA:   3'- caCGA-GCUa---GCACGUGGACGGuuUGG- -5'
6558 5' -53.2 NC_001847.1 + 14787 0.67 0.93327
Target:  5'- -aGCUCGAcggucccgUUGUaGCGCC-GCCcGGCCg -3'
miRNA:   3'- caCGAGCU--------AGCA-CGUGGaCGGuUUGG- -5'
6558 5' -53.2 NC_001847.1 + 107328 0.67 0.93327
Target:  5'- -aGC-CGcgCGUGCGCCgggGCgCGAaugGCCa -3'
miRNA:   3'- caCGaGCuaGCACGUGGa--CG-GUU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.