miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6560 3' -50.5 NC_001847.1 + 48063 0.66 0.984955
Target:  5'- -gCGCGCGCcgCGaaaGGCGGGGGCGc -3'
miRNA:   3'- aaGUGCGUGuaGUag-UCGCUCUUGUu -5'
6560 3' -50.5 NC_001847.1 + 97367 0.66 0.984955
Target:  5'- -gCAgGCACAUgAUCAGgcgcgagcccucCGAGAACAc -3'
miRNA:   3'- aaGUgCGUGUAgUAGUC------------GCUCUUGUu -5'
6560 3' -50.5 NC_001847.1 + 104872 0.66 0.982973
Target:  5'- -cCACGCGCcgCcgCAGCGGuGGCGg -3'
miRNA:   3'- aaGUGCGUGuaGuaGUCGCUcUUGUu -5'
6560 3' -50.5 NC_001847.1 + 2059 0.66 0.982973
Target:  5'- -cCACGCGCcgCcgCAGCGGuGGCGg -3'
miRNA:   3'- aaGUGCGUGuaGuaGUCGCUcUUGUu -5'
6560 3' -50.5 NC_001847.1 + 99364 0.66 0.982973
Target:  5'- gUCgAUGCGCGcCGUUAGCGGGuGCGAg -3'
miRNA:   3'- aAG-UGCGUGUaGUAGUCGCUCuUGUU- -5'
6560 3' -50.5 NC_001847.1 + 113405 0.66 0.9808
Target:  5'- gUCGCGgcaGCGUagCGUCGGgGGGAACAAc -3'
miRNA:   3'- aAGUGCg--UGUA--GUAGUCgCUCUUGUU- -5'
6560 3' -50.5 NC_001847.1 + 1941 0.66 0.9808
Target:  5'- --gGCGCGCGgcgCAgagcuccucCAGCGAGGGCAGc -3'
miRNA:   3'- aagUGCGUGUa--GUa--------GUCGCUCUUGUU- -5'
6560 3' -50.5 NC_001847.1 + 99845 0.66 0.9808
Target:  5'- -gCGCGCGCcgC-UCGGCGGGGcugcGCAGu -3'
miRNA:   3'- aaGUGCGUGuaGuAGUCGCUCU----UGUU- -5'
6560 3' -50.5 NC_001847.1 + 132334 0.66 0.978426
Target:  5'- cUCA-GCACGgc--CAGCGAGAGCGAc -3'
miRNA:   3'- aAGUgCGUGUaguaGUCGCUCUUGUU- -5'
6560 3' -50.5 NC_001847.1 + 117960 0.66 0.978426
Target:  5'- uUUCGCGCACGUCcGUCcuuacgcuCGAGGACGc -3'
miRNA:   3'- -AAGUGCGUGUAG-UAGuc------GCUCUUGUu -5'
6560 3' -50.5 NC_001847.1 + 94709 0.66 0.978426
Target:  5'- -aCugGCGCuUCAgCAGCGAGuugGCAGg -3'
miRNA:   3'- aaGugCGUGuAGUaGUCGCUCu--UGUU- -5'
6560 3' -50.5 NC_001847.1 + 32825 0.67 0.975842
Target:  5'- --gACGCGgcCGUCAUCuggGGCGAGGACu- -3'
miRNA:   3'- aagUGCGU--GUAGUAG---UCGCUCUUGuu -5'
6560 3' -50.5 NC_001847.1 + 81847 0.67 0.975842
Target:  5'- -gCGCGUACGUCAgCGGCGuGAGgCGGa -3'
miRNA:   3'- aaGUGCGUGUAGUaGUCGCuCUU-GUU- -5'
6560 3' -50.5 NC_001847.1 + 80578 0.67 0.973039
Target:  5'- cUCGCGCGCGUCAcgGGCGcGAcuGCGu -3'
miRNA:   3'- aAGUGCGUGUAGUagUCGCuCU--UGUu -5'
6560 3' -50.5 NC_001847.1 + 45977 0.67 0.96674
Target:  5'- --gGCGCGCG-CGUCGGCGAcGACGc -3'
miRNA:   3'- aagUGCGUGUaGUAGUCGCUcUUGUu -5'
6560 3' -50.5 NC_001847.1 + 18844 0.67 0.96674
Target:  5'- -gCGCGCGCcgCAcgggUCAGCGGGGcACGc -3'
miRNA:   3'- aaGUGCGUGuaGU----AGUCGCUCU-UGUu -5'
6560 3' -50.5 NC_001847.1 + 116272 0.68 0.959467
Target:  5'- cUCugGCGCcgC-UCGGCGAG-GCAGc -3'
miRNA:   3'- aAGugCGUGuaGuAGUCGCUCuUGUU- -5'
6560 3' -50.5 NC_001847.1 + 92735 0.68 0.955448
Target:  5'- --gGCGC-CGUCGUCAGCGcgcgcGAACAu -3'
miRNA:   3'- aagUGCGuGUAGUAGUCGCu----CUUGUu -5'
6560 3' -50.5 NC_001847.1 + 3925 0.68 0.955448
Target:  5'- -gCACGCACAgcgCuggCAGCGGGcGGCGAg -3'
miRNA:   3'- aaGUGCGUGUa--Gua-GUCGCUC-UUGUU- -5'
6560 3' -50.5 NC_001847.1 + 75214 0.68 0.955448
Target:  5'- --gGCGCACG--GUCAGCGAGGcCAGg -3'
miRNA:   3'- aagUGCGUGUagUAGUCGCUCUuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.